| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4377 |
|---|
| Symbol | |
|---|
| ID | 6279406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 434851 |
|---|
| End bp | 436506 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642615471 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001888124 |
|---|
| Protein GI | 187919093 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACC GATTCGACTT CGTCGTCGTC GGCGCGGGAT CCGCGGGTTG CGTGCTGGCG
AACCGGCTTT CCGAAGGCGG CCGCTACTCG GTGTGTCTAC TCGAAGCCGG GCCGGCCGAC
CGTTTCATGT GGATTCATAT CCCCATCGGC TATGGCAAGA CGATGTTTCA CCCGGTCTAC
AACTGGGGCT TCTATACCGA TCCCGATCCG AACATGCACA ATCGCCGGCT CTATTGGCCG
CGTGGCCGTA CGCTGGGCGG CAGCAGTTCG ATCAACGGTC TGATCTATGT GCGCGGACAA
CGGGACGATT ACGACAACTG GGCGCGACTC GGCAATCGCG GCTGGAGTTG GCAAGACTGC
CTGCCGTATT TCAAACGGCT GGAGCATAAC GAACTGGGCG AAGGGCCGAC GCGCGGTGTC
GACGGACCGC TGTGGGCCTC GACGATCAAA CAGCGCCACG AACTGGTGGA TGCGTTTATC
GAGGCATCGA ATTCGTTAGG CGTGGCAAGC ATCGACGACT TCAATACGGG CGATCAGGAA
GGCGTCGGCT ACTATCAGCT GACCACGCGC CGCGGGTTTC GCTGCTCGAC GGCTGTTGCT
TATCTCAAAC CCGCGCGGCA GCGCCAGAAC CTGCATGTGG AAACCGACGC GATGGCCTCG
AAGATTCTTT TCGAAGGCAC CCGCGCCTGC GGCGTGCAGT ATCGGCAACA CGGCGAGTTG
CGCGAAGTGC GCGCCAATCG CGAAGTGATC CTGACCGCCG GTGCATTGCA GTCCCCGCAA
TTGCTGCAAC TGTCCGGCGT GGGACCGGCC GCGCTACTGC GCGAGTTCGG CATTCCCGTG
GTGGCCAATC GCGCGGGCGT TGGCGAGAAT TTGCAGGACC ATCTGCAAAT CCGTCTGATC
TATGAAGTGA CGAAGCCGAT CACGACCAAC GATCAACTGC GTTCATGGAC GGGCCGCGCG
AAGATGGGCC TGCAATGGGC GCTGATGCGC AGCGGCCCGC TCGCGGTCGG TATCAACCAG
GGTGGCATGT TCTGCCGCGC GCTGCCTGAA GAATCGGCGA CACCGGATAC CCAGTTCCAT
TTCTCGACGC TGTCGGCGGA TTCCGCGGGC GGCAACGTCC ACGACTTTCC CGGTTGTACG
TACTCGATCT GTCAGTTGCG CCCGGAATCG CGCGGCGCGG TGCGCATTCG CAGCGCCGAT
CCGCGTGAGG CGCCGTCTAT TCAGCCCAAC TATCTGGACA CCGATCTGGA CCGGCGCACG
ACCATCGCCG GCGTGCGTTT CGCGCGCCGC GTCGCGGCGG CGCAGCCGAT GGCCGGACTG
ATGAAACGCG AGGTGCGGCC CGGCGCGGAC GCGCAGACTG ACGACGAACT GCTCGAGTTC
TGCCGGGAGT ACGGACAGAC AATTTTCCAT CCATCTGGTA CAGCGAAGAT GGGACCGGCG
GGCGATCCGC TCGCGGTGGT CGATGAACGT TTGCGCGTGT ACGGCACGCA GGGACTGCGC
GTGGTCGATT GCTCGATCAT GCCGACACTC GTGTCGGGTA ATACGAATGT ACCGATCGTG
ATGGTCGCTG AAAAAGCATC GGACATGATT CTGCACGACG CAAGCGGCGT CGATCGAGGT
GTGGCGACGA CGCCTGCGGC GAAGGTGGCC GCTTGA
|
|---|
| Protein sequence | MADRFDFVVV GAGSAGCVLA NRLSEGGRYS VCLLEAGPAD RFMWIHIPIG YGKTMFHPVY
NWGFYTDPDP NMHNRRLYWP RGRTLGGSSS INGLIYVRGQ RDDYDNWARL GNRGWSWQDC
LPYFKRLEHN ELGEGPTRGV DGPLWASTIK QRHELVDAFI EASNSLGVAS IDDFNTGDQE
GVGYYQLTTR RGFRCSTAVA YLKPARQRQN LHVETDAMAS KILFEGTRAC GVQYRQHGEL
REVRANREVI LTAGALQSPQ LLQLSGVGPA ALLREFGIPV VANRAGVGEN LQDHLQIRLI
YEVTKPITTN DQLRSWTGRA KMGLQWALMR SGPLAVGINQ GGMFCRALPE ESATPDTQFH
FSTLSADSAG GNVHDFPGCT YSICQLRPES RGAVRIRSAD PREAPSIQPN YLDTDLDRRT
TIAGVRFARR VAAAQPMAGL MKREVRPGAD AQTDDELLEF CREYGQTIFH PSGTAKMGPA
GDPLAVVDER LRVYGTQGLR VVDCSIMPTL VSGNTNVPIV MVAEKASDMI LHDASGVDRG
VATTPAAKVA A
|
|---|
| |