| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4359 |
|---|
| Symbol | |
|---|
| ID | 6278565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 412606 |
|---|
| End bp | 414264 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642615453 |
|---|
| Product | Amidohydrolase 3 |
|---|
| Protein accession | YP_001888106 |
|---|
| Protein GI | 187919075 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.747715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAC GAGAAGAAAA GTGCCCTACA CAAGTCTTCG TCGCGAAGAA GATCGTGACG
ATGAATCCCA TGCAGCCCTA TGCGACGCAC GTGGCGATTC GCGACGGCAA GATTCTCTCG
GTAGGCGGCG CTGACGACGT GAAGCAATGG GGCGATGCCG AAATCGTCGA TACGTTCAGC
GATAAAGTGT TGATGCCGGG CTTTGTCGAA GGCCATTGCC ACTTGATGGA AGGCGCGATG
TGGGACGCCG TCTATGTCGG CTACTACGAC CGCCGTGGCC CAGACGGCCG GCGCTGGCCA
GGCCTGACAT CGCTGGACGC CGTGATCGAG CGCCTGAAGG CGGCGCAAGC CGAAATGGCA
TCGGCCGACG CTCCGCTGCT CGCGTGGGGC TTCGATCCGA TCTTCTTCGG CACCCAACGC
CTGAGCGTGC GCGAACTGGA CACGGTGTCG GCCGAGCGGC CCATCGTGAT CCTGCATGCG
AGCGTGCACC TGATGAACGT CAATTCGCCG ATGCTCGCGC GCGCCGGCAT CGACGAAGAA
ACGGATATCG ACGGCATCGA CAAAGACGAG AGCGGACAGC CGACCGGCGA GTTGCAGGAG
TTCGCCGCCA TGTTCCCGGT CTACCGCGTG ATCGGTGCCG GCCTCTCGAT CGCCGCGAGC
GAAAGCACGA AGGCGATCTG GAATTTCGGC CGCGTCGCGC AACTCGCCGG TGTGACGACC
GCCACCGATC TGGTCAACGA CTTCTCCGAA ACCGGTAATC GCAATCTGCG CGAAGTGACC
GCGAGCGCGG ATTTTCCCGT GCGTATCGTG CCCGCCTTCG CGCCGCAGCG CAGCCCTGAA
GGCGGCGCCC AACGGGTGCT CTCGGCGATG GAAACCGCCA CGCCGAAGCT TCACTTCGGG
CCCGTCAAGT TTATCGTCGA CGGTTCGATC CAAGGCTTCA CCGCGCGCCT GAAATGGCCC
GGCTATCTGA ACGGTAAGCC CAACGGTTTA TGGCTGATTC CGCCGAGCCA GTTCGTCGAA
GTGTTCACGC CGTTTCACGA AGCGGGCCTG CAACTGCACG TGCACACCAA CGGCGACGAG
GCGACCGAGC TCGTGCTCGA CGCGTTCGAG CGGCTTCTCA CGCTTCATCC GCGACGCGAT
CACCGGCATA CGCTGCAGCA CTGCCAGATG GCGGACGCGA GCCAGCTCGC GCGCGCGGCG
AGCCTCGGCC TGTGCATCAA TTTCTTTTCG AACCACATCT ATTACTGGGG CGACGCGCAC
TATACGCAGA CCATGGGCGC GGACCGCGCG AATCGCATGA ACGCGGCGGA ATCGGCGCGC
CGCCTGGGCA TTCCATTTGC GTTTCATTCC GACGCGCCCA TCACGCCGCT CAATCCGCTC
TTCACCGCAT GGTGCGCGTC GCAGCGCGAA ACGGCGTCGG GGCGCGTGCT CGGTGCGAAC
GAACGCGTGC CGATCGCCGA CGCGCTGCGC GCGATCACGC TTGGCGCCGC TTATACGCTC
AAGATGGATC ACCTGGTAGG CAGTATCGAA GTCGGCAAAT TCGCGGATTT CGCGGTGCTC
GCGGAAGACC CCGCCGAAGT CGCGCCGCAA CGTCTGAAGG ATCTGGAAGT GTGGGGCACG
GTGCTCGGCG GCCGCATTTT CCAGGCGCCG GCGGGATGA
|
|---|
| Protein sequence | MTQREEKCPT QVFVAKKIVT MNPMQPYATH VAIRDGKILS VGGADDVKQW GDAEIVDTFS
DKVLMPGFVE GHCHLMEGAM WDAVYVGYYD RRGPDGRRWP GLTSLDAVIE RLKAAQAEMA
SADAPLLAWG FDPIFFGTQR LSVRELDTVS AERPIVILHA SVHLMNVNSP MLARAGIDEE
TDIDGIDKDE SGQPTGELQE FAAMFPVYRV IGAGLSIAAS ESTKAIWNFG RVAQLAGVTT
ATDLVNDFSE TGNRNLREVT ASADFPVRIV PAFAPQRSPE GGAQRVLSAM ETATPKLHFG
PVKFIVDGSI QGFTARLKWP GYLNGKPNGL WLIPPSQFVE VFTPFHEAGL QLHVHTNGDE
ATELVLDAFE RLLTLHPRRD HRHTLQHCQM ADASQLARAA SLGLCINFFS NHIYYWGDAH
YTQTMGADRA NRMNAAESAR RLGIPFAFHS DAPITPLNPL FTAWCASQRE TASGRVLGAN
ERVPIADALR AITLGAAYTL KMDHLVGSIE VGKFADFAVL AEDPAEVAPQ RLKDLEVWGT
VLGGRIFQAP AG
|
|---|
| |