Gene Bphyt_4280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_4280 
Symbol 
ID6278521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp329586 
End bp330665 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content63% 
IMG OID642615374 
ProductABC transporter related 
Protein accessionYP_001888027 
Protein GI187918996 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.212856 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCATC ACTTTGAGCA GTTGCGGCTC GATTCGGTGA GCCGCAGTTT CACGAATGCG 
GAAGGCCAGG CGATCGCGGC ACTGCGTGGA CTCGATCTGA CCATCCAGCG TGGCGAGTTC
ATCGCATTGC TGGGGCCGTC CGGTTGCGGC AAGTCGACGG CGCTCAATTG CATCGCCGGA
TTGCAGCCGT TGACGAGCGG CGGCATCTGG CTCGACGACA AACGCATCGA CGTACTGCCG
CCGGAGAAGC GCGGCTTCGG CATGGTATTT CAGAACTACG CGCTGTTTCC GCACATGAGC
GTGCTCGACA ACGTCGGCTT CGGTTTGAAA ATGCGCGGCA TCGGCAAGAG CGAAGCCGTG
CGCCGGGTGC GCGAAGCGTT GCAACTCGTG CAACTAGTCG GGCACGAGCG CAAACTGCCC
GGCCAACTCT CCGGCGGCCA GCAGCAACGC GTCGCGATTG CGCGCGCGAT CGTGATCGAG
CCGCCGCTGA TCCTGATGGA CGAACCGCTG TCGAATCTCG ACACCAAGCT GCGCATCGAA
ATGCGCGCGG AGATTCGCCG CATCCATAGC CAGCTCGAAC GCGCGACACT TTACGTGACG
CACGATCAGG ACGAAGCGCT GTCCATGGCC GATCGCATCG TCGTGATGAG GGAAGGCGTG
GTGCAGCAGG TCGCCACGCC GAAAGAGGTC TATACGCGGC CGCAGAATCT GCATGTCGCG
CGCTTCATGG GCTATCGCAA TGTGGCCGAG TTCGAACTCG AAGGCATGCA AGGCGAAAGC
GTGATGGTGA GCGCGCACGG TGTGCGTCTG CTCGGCACGC CGATGGCCGG CTTCAATAGC
AAACGCGTGA GCGTCGCGCT GCGTCCCGAG GATATGGAGC GCGCCACGCC CGGTGCGGAG
AATGCCTTCG ATGCGTTGGT GACGACCGTC GAATACGGCG GCCGCGATTC GCTGCTGCGC
GTGAAGACCG CCTTTGGCGA TATCTGGGCG CGCGTCGGCG GAGAATTCGA AGAAGGCGAG
CGCATCAGCC TGCGCGTGCC GCCGTCGCGC ACGCTCGTGT ACGACGCGGA GGCGGTGTGA
 
Protein sequence
MKHHFEQLRL DSVSRSFTNA EGQAIAALRG LDLTIQRGEF IALLGPSGCG KSTALNCIAG 
LQPLTSGGIW LDDKRIDVLP PEKRGFGMVF QNYALFPHMS VLDNVGFGLK MRGIGKSEAV
RRVREALQLV QLVGHERKLP GQLSGGQQQR VAIARAIVIE PPLILMDEPL SNLDTKLRIE
MRAEIRRIHS QLERATLYVT HDQDEALSMA DRIVVMREGV VQQVATPKEV YTRPQNLHVA
RFMGYRNVAE FELEGMQGES VMVSAHGVRL LGTPMAGFNS KRVSVALRPE DMERATPGAE
NAFDALVTTV EYGGRDSLLR VKTAFGDIWA RVGGEFEEGE RISLRVPPSR TLVYDAEAV