Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_4063 |
Symbol | |
ID | 6279115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 80806 |
End bp | 81477 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642615164 |
Product | extracytoplasmic-function sigma-70 factor |
Protein accession | YP_001887817 |
Protein GI | 187918786 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.806814 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGAGG TGCTCGTCCG GCGAGAGCCT TCAACAGCGA TGCCGATATC GGTTCTCAAC GCCGCAGGCG CCTGTCCACC GGTTTCGCGG CGCACGCGCA ACCACGCGCG TGCGGTCGAT TGGGAGAAGG GCACGCTGCT CGACGTGCTG ATCGACAACC GGCCGATGCT CGTCAATCTG GCGCGTGGCT TCGTGGGCTG CGCGAGTCTC GCGGAAGACG TGGTGCACGA CGTCTTCATC AAGCTGGTCG ATTTCCCCGA TCAGGACGCG GTGCGTCAGC CGGTCGCGTA CGTAACGCGC ATGGTGCGCA ACGCGTCGAT CGACGCCTTC CGCCGCCAGA GCCTCGAAAA CACCTATCAC GCGGACGAAG ACGACGGCCT GCATGTGCCA TCGCCGGAGC CTTCGCCGGA AGCGGCGCTG CTCGTGCGCG ACACGCTGCG GCACGTCTAC AACGCGCTCG AGCAACTGCC GGCGCGCAGC CGCGCCGCCT TCGAAATGGT GCGCCTGCGC GAAGAAACGC TGCAAAACAC CGCGCGCGCC CTCGACGTCT CGCAGACGCT GGTGCATTTC ATGGTGCGCG ACGCCGAGAA GCATTGCGCC GATTGCCTCG ACGCCTGCAA TCGCGGCGTG GCCGGCCCCG CGTTCTGCAG CGGACGCGCG CGCCGGCGGT AA
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Protein sequence | MAEVLVRREP STAMPISVLN AAGACPPVSR RTRNHARAVD WEKGTLLDVL IDNRPMLVNL ARGFVGCASL AEDVVHDVFI KLVDFPDQDA VRQPVAYVTR MVRNASIDAF RRQSLENTYH ADEDDGLHVP SPEPSPEAAL LVRDTLRHVY NALEQLPARS RAAFEMVRLR EETLQNTARA LDVSQTLVHF MVRDAEKHCA DCLDACNRGV AGPAFCSGRA RRR
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