Gene Bphyt_4063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_4063 
Symbol 
ID6279115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp80806 
End bp81477 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content67% 
IMG OID642615164 
Productextracytoplasmic-function sigma-70 factor 
Protein accessionYP_001887817 
Protein GI187918786 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value0.806814 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGAGG TGCTCGTCCG GCGAGAGCCT TCAACAGCGA TGCCGATATC GGTTCTCAAC 
GCCGCAGGCG CCTGTCCACC GGTTTCGCGG CGCACGCGCA ACCACGCGCG TGCGGTCGAT
TGGGAGAAGG GCACGCTGCT CGACGTGCTG ATCGACAACC GGCCGATGCT CGTCAATCTG
GCGCGTGGCT TCGTGGGCTG CGCGAGTCTC GCGGAAGACG TGGTGCACGA CGTCTTCATC
AAGCTGGTCG ATTTCCCCGA TCAGGACGCG GTGCGTCAGC CGGTCGCGTA CGTAACGCGC
ATGGTGCGCA ACGCGTCGAT CGACGCCTTC CGCCGCCAGA GCCTCGAAAA CACCTATCAC
GCGGACGAAG ACGACGGCCT GCATGTGCCA TCGCCGGAGC CTTCGCCGGA AGCGGCGCTG
CTCGTGCGCG ACACGCTGCG GCACGTCTAC AACGCGCTCG AGCAACTGCC GGCGCGCAGC
CGCGCCGCCT TCGAAATGGT GCGCCTGCGC GAAGAAACGC TGCAAAACAC CGCGCGCGCC
CTCGACGTCT CGCAGACGCT GGTGCATTTC ATGGTGCGCG ACGCCGAGAA GCATTGCGCC
GATTGCCTCG ACGCCTGCAA TCGCGGCGTG GCCGGCCCCG CGTTCTGCAG CGGACGCGCG
CGCCGGCGGT AA
 
Protein sequence
MAEVLVRREP STAMPISVLN AAGACPPVSR RTRNHARAVD WEKGTLLDVL IDNRPMLVNL 
ARGFVGCASL AEDVVHDVFI KLVDFPDQDA VRQPVAYVTR MVRNASIDAF RRQSLENTYH
ADEDDGLHVP SPEPSPEAAL LVRDTLRHVY NALEQLPARS RAAFEMVRLR EETLQNTARA
LDVSQTLVHF MVRDAEKHCA DCLDACNRGV AGPAFCSGRA RRR