| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4026 |
|---|
| Symbol | |
|---|
| ID | 6280153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 42010 |
|---|
| End bp | 43176 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642615129 |
|---|
| Product | Squalene/phytoene synthase |
|---|
| Protein accession | YP_001887782 |
|---|
| Protein GI | 187918751 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.600735 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCGGG ACAGGTCCGC CGCGCACGGC AGAGGCGCTT CGCCGTATAC AATTCGGCAG
CGCCTGATTT TTTGCCCGTT TTTTGCCCGC TTCCTGCACA ACTCCGACCT GATCCCATCC
ATGCCGAATC CGACCCGGGC CTTCCTTCTC GGCCCGCTCC TGAAAGGCGT TTCACGCTCC
TTCTATCTCA CCCTGCGCGT GCTGCCCGTC GGGATGCGCG ATCCGATCGG ACTCGCTTAC
CTGCTGGCGC GCGCGGCCGA CACGATCGCC GACACCTCGC TGATCTCGCC GGAACAACGC
CTTGCCTTGC TGCTGTCACT GCGCGCTCAG GTGAACGGCG CAACAGACGA CGTGGCGCTA
TTCCAGCGCA TGGCCGCGGA AGTGGCGGGG CAGCAGGACC AGTCGGACGA GAAAGTGCTG
CTCGAATCGC TCGGCCCCGC GCTCGATGTG TTGTCGCAAC TGAGCGAATC GGATCGTAAG
GCTGTCCGCG AGATCGTTTC GACGCTGACC GAAGGCATGG AGTTCGATCT TCGCACCTTC
CCCGACGAAC GTTCCGGTCA GATCGCGGCG CTACGCGAAT ACGACGAACT CGACCGCTAC
ACGTACCTCG TGGCGGGCTG CGTCGGCGAA TTCTGGACCA CGATGACCTA CGCGCACATG
CCCGGCACGC TGAAGGAGCG GCCCGAGACG ATGGCACGGC GCGGCGTGCG CTTCGGCAAG
GCGCTGCAGA TGACCAACGT GCTGCGCGAT TGCGGCAAGG ATCTGCGGAT CGGCCGCTGT
TATCTGCCGC AGACCTTGCT CGACCGATAT GGTCTAAGCG TGCAGGATTT GTTGGTGCCG
GCTAATTCGG TGCGTGCCCG GCCGCTGATG CTCGAGCTTT TGCGCACGAC CCTCGATCAT
TTCCGTGACG CCCTCGATTA CACGTTGGCG ATTCCTGCGT TCTCCGTGCG TTTGCGGCTC
GCCTGTTTGT GGCCGATTCT GATTGGTCTG GAGACGCTGC TCCTGCTCGT GGACAACGCT
GCCTGGCTCG ATCCGCAGAA AGTGTCGAAA GTGCGGCGTA ATAGGGTGTA TCAGATCATC
GCGTCGTCGC TGTTGCTGGT GCCTTCGAAT GGACTGGTGC GCAACGCCAT TGAACAGCGA
ATCAGGCAAA TCGAAGCCCG CCTTTGA
|
|---|
| Protein sequence | MGRDRSAAHG RGASPYTIRQ RLIFCPFFAR FLHNSDLIPS MPNPTRAFLL GPLLKGVSRS
FYLTLRVLPV GMRDPIGLAY LLARAADTIA DTSLISPEQR LALLLSLRAQ VNGATDDVAL
FQRMAAEVAG QQDQSDEKVL LESLGPALDV LSQLSESDRK AVREIVSTLT EGMEFDLRTF
PDERSGQIAA LREYDELDRY TYLVAGCVGE FWTTMTYAHM PGTLKERPET MARRGVRFGK
ALQMTNVLRD CGKDLRIGRC YLPQTLLDRY GLSVQDLLVP ANSVRARPLM LELLRTTLDH
FRDALDYTLA IPAFSVRLRL ACLWPILIGL ETLLLLVDNA AWLDPQKVSK VRRNRVYQII
ASSLLLVPSN GLVRNAIEQR IRQIEARL
|
|---|
| |