| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_A0253 |
|---|
| Symbol | |
|---|
| ID | 6273599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010660 |
|---|
| Strand | + |
|---|
| Start bp | 170105 |
|---|
| End bp | 171742 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641728875 |
|---|
| Product | invasion plasmid antigen |
|---|
| Protein accession | YP_001883266 |
|---|
| Protein GI | 187734472 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 93 |
|---|
| Plasmid unclonability p-value | 0.0402071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTACCGA TAAATAATAA CTTTTCATTG CCCCAAAATT CTTTTTATAA CACTATTTCC
GGTACATATG CTGATTACTT TTCAGCATGG GATAAATGGG AAAAACAAGC GCTCCCCGGT
GAAGAGCGTG ATGAGGCTGT CTCCCGACTT AAAGAATGTC TTATCAATAA TTCCGATGAA
CTTCGACTGG ACCGTTTAAA TCTGTCCTCG CTACCTGACA ACTTACCAGC TCAGATAACG
CTGCTCAATG TATCATATAA TCAATTAACT AACCTACCTG AACTGCCTGT TACGCTAAAA
AAATTATATT CCGCCAGCAA TAAATTATCA GAATTGCCCG TGCTACCTCC TGCGCTGGAG
TCACTTCAGG TACAACACAA TGAGCTGGAA AACCTGCCAG CTTTACCCGA TTCGTTATTG
ACTATGAATA TCAGCTATAA CGAAATAGTC TCCTTACCAT CGCTCCCACA GGCTCTTAAA
AATCTCAGAG CGACCCGTAA TTTCCTCACT GAGCTACCAG CATTTTCTGA GGGAAATAAT
CCCGTTGTCA GAGAGTATTT TTTTGATAGA AATCAGATAA GTCATATCCC GGAAAGCATT
CTTAATCTGA GGAATGAATG TTCAATACAT ATTAGTGATA ACCCATTATC ATCCCATGCT
CTGCAAGCCC TGCAAAGATT AACCTCTTCG CCGGACTACC ACGGCCCACG GATTTACTTC
TCCATGAGTG ACGGACAACA GAATACACTC CATCGCCCCC TGGCTGATGC CGTGACAGCA
TGGTTCCCGG AAAACAAACA ATCTGATGTA TCACAGATAT GGCATGCTTT TGAACATGAA
GAGCATGCCA ACACCTTTTC CGCGTTCCTT GACCGCCTTT CCGATACCGT CTCTGCACGC
AATACCTCCG GATTCCGTGA ACAGGTCGCT GCATGGCTGG AAAAACTCAG TGCCTCTGCG
GAGCTTCGAC AGCAGTCTTT CGCTGTTGCT GCTGATGCCA CTGAGAGCTG TGAGGACCGT
GTCGCGCTCA CATGGAACAA TCTCCGGAAA ACCCTCCTGG TCCATCAGGC ATCAGAAGGC
CTTTTCGATA ATGATACCGG CGCTCTGCTC TCCCTGGGCA GGGAAATGTT CCGCCTCGAA
ATTCTGGAGG ACATTGCCCG GGATAAAGTC AGAACTCTCC ATTTTGTGGA TGAGATAGAA
GTCTACCTGG CCTTCCAGAC CATGCTCGCA GAGAAACTTC AGCTCTCCAC TGCCGTGAAG
GAAATGCGTT TCTATGGCGT GTCGGGAGTG ACAGCAAATG ACCTCCGCAC TGCCGAAGCC
ATGGTCAGAA GCCGTGAAGA GAATGAATTT AAGGACTGGT TCTCCCTCTG GGGACCATGG
CATGCTGTAC TGAAGCGTAC GGAAGCTGAC CGCTGGGCGC AGGCAGAAGA GCAGAAATAT
GAGATGCTGG AGAATGAGTA CCCTCAGAGG GTGGCTGACC GGCTGAAAGC ATCAGGTCTG
AGCGGTGATG CGGATGCGGA GAGGGAAGCC GGTGCACAGG TGATGCGTGA GACTGAACAG
CTGATTTACC GTCAGCTGAC TGACGAGGTA CTGGCCCTGC GATTGTCTGA AAACGGCTCA
CAACTGCACC ATTCATAA
|
|---|
| Protein sequence | MLPINNNFSL PQNSFYNTIS GTYADYFSAW DKWEKQALPG EERDEAVSRL KECLINNSDE
LRLDRLNLSS LPDNLPAQIT LLNVSYNQLT NLPELPVTLK KLYSASNKLS ELPVLPPALE
SLQVQHNELE NLPALPDSLL TMNISYNEIV SLPSLPQALK NLRATRNFLT ELPAFSEGNN
PVVREYFFDR NQISHIPESI LNLRNECSIH ISDNPLSSHA LQALQRLTSS PDYHGPRIYF
SMSDGQQNTL HRPLADAVTA WFPENKQSDV SQIWHAFEHE EHANTFSAFL DRLSDTVSAR
NTSGFREQVA AWLEKLSASA ELRQQSFAVA ADATESCEDR VALTWNNLRK TLLVHQASEG
LFDNDTGALL SLGREMFRLE ILEDIARDKV RTLHFVDEIE VYLAFQTMLA EKLQLSTAVK
EMRFYGVSGV TANDLRTAEA MVRSREENEF KDWFSLWGPW HAVLKRTEAD RWAQAEEQKY
EMLENEYPQR VADRLKASGL SGDADAEREA GAQVMRETEQ LIYRQLTDEV LALRLSENGS
QLHHS
|
|---|
| |