| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_A0179 |
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| Symbol | mxiD |
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| ID | 6273557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010660 |
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| Strand | + |
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| Start bp | 119224 |
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| End bp | 120924 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 641728817 |
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| Product | type III secretion outer membrane protein MxiD |
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| Protein accession | YP_001883208 |
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| Protein GI | 187734437 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 94 |
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| Plasmid unclonability p-value | 0.0824989 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT TTAATATTAA ATCTTTGACT CTCTTGATTG TATTGTTACC ATTGATAGTT
AATGCTAATA ATATTGACTC TCATTTATTA GAACAAAATG ACATAGCGAA ATATGTTGCT
CAAAGTGATA CGGTAGGATC TTTTTTTGAA CGTTTTTCTG CGTTATTAAA TTATCCTATT
GTTGTTAGCA AACAAGCTGC AAAAAAGAGA ATATCTGGGG AGTTTGATTT ATCTAATCCA
GAAGAAATGC TTGAAAAAAT GACATTACTT GTGGGACTCA TATGGTATAA AGATGGAAAT
GCATTATACA TATATGACTC TGGAGAATTA ATAAGCAAAG TTATTTTGCT GGAGAATATA
TCACTTAATT ATCTTATTCA GTATCTGAAG GATGCTAACC TTTATGATCA CAGATATCCT
ATAAGAGGAA ACATTAGTGA TAAAACATTC TATATATCTG GTCCTCCGGC ATTGGTTGAA
CTGGTAGCTA ATACAGCAAC TTTGCTTGAT AAGCAGGTTT CTTCTATTGG GACAGATAAA
GTTAATTTTG GGGTTATAAA ATTAAAAAAT ACATTTGTTA GTGACAGAAC TTATAATATG
AGAGGGGAGG ATATTGTCAT CCCAGGGGTG GCTACTGTTG TAGAACGTTT ATTAAATAAT
GGTAAGGCTC TGAGTAACAG ACAAGCCAAA AATGATCCGA TGCCACCCTT TAATATTACA
CAGAAAGTAT CTGAGGATAG TAATGACTTT TCATTTAGTT CAGTTACCAA TAGTTCTATA
TTAGAGGATG TATCACTTAT TGCATATCCA GAAACCAATT CTATATTAGT CAAAGGTAAT
GATCAGCAAA TACAGATTAT TCGCGATATT ATCACTCAGT TAGATGTAGC CAAACGACAT
ATAGAATTAT CATTATGGAT AATCGATATT GATAAATCTG AATTAAATAA CCTTGGCGTT
AATTGGCAAG GAACGGCTTC ATTTGGTGAT TCGTTTGGTG CATCATTTAA TATGAGCTCA
TCAGCATCGA TAAGCACGTT GGACGGCAAT AAGTTTATTG CTTCAGTTAT GGCATTAAAT
CAGAAAAAGA AAGCAAATGT AGTTTCAAGG CCGGTGATTT TGACACAAGA GAATATTCCG
GCTATATTTG ATAATAACAG GACTTTTTAT GTGTCATTAG TTGGTGAGCG CAATTCTTCG
TTGGAGCATG TTACGTATGG AACATTGATA AATGTTATAC CTCGCTTTTC ATCTCGGGGA
CAAATTGAGA TGTCTTTAAC GATAGAGGAT GGAACAGGAA ATAGTCAGTC AAATTACAAT
TATAATAATG AAAATACATC TGTCCTTCCA GAAGTTGGAA GGACCAAAAT CAGTACAATA
GCGAGAGTTC CACAAGGCAA AAGTTTGTTG ATAGGTGGTT ATACGCATGA AACGAACTCT
AACGAAATAG TATCTATTCC TTTTCTCTCC TCTATTCCTG TAATCGGTAA TGTGTTCAAG
TATAAAACAA GTAATATCAG TAATATTGTA AGGGTTTTTC TGATTCAACC CCGTGAGATA
AAGGAGTCAA GTTATTATAA TACTGCAGAA TATAAGAGCC TCATATCTGA AAGAGAAATA
CAAAAGACTA CACAAATAAT CCCATCTGAA ACTACTTTGC TGGAAGACGA AAAATCATTG
GTTTCATACT TAAATTACTA A
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| Protein sequence | MKKFNIKSLT LLIVLLPLIV NANNIDSHLL EQNDIAKYVA QSDTVGSFFE RFSALLNYPI
VVSKQAAKKR ISGEFDLSNP EEMLEKMTLL VGLIWYKDGN ALYIYDSGEL ISKVILLENI
SLNYLIQYLK DANLYDHRYP IRGNISDKTF YISGPPALVE LVANTATLLD KQVSSIGTDK
VNFGVIKLKN TFVSDRTYNM RGEDIVIPGV ATVVERLLNN GKALSNRQAK NDPMPPFNIT
QKVSEDSNDF SFSSVTNSSI LEDVSLIAYP ETNSILVKGN DQQIQIIRDI ITQLDVAKRH
IELSLWIIDI DKSELNNLGV NWQGTASFGD SFGASFNMSS SASISTLDGN KFIASVMALN
QKKKANVVSR PVILTQENIP AIFDNNRTFY VSLVGERNSS LEHVTYGTLI NVIPRFSSRG
QIEMSLTIED GTGNSQSNYN YNNENTSVLP EVGRTKISTI ARVPQGKSLL IGGYTHETNS
NEIVSIPFLS SIPVIGNVFK YKTSNISNIV RVFLIQPREI KESSYYNTAE YKSLISEREI
QKTTQIIPSE TTLLEDEKSL VSYLNY
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