| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4918 |
|---|
| Symbol | prfC |
|---|
| ID | 6270692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 4583843 |
|---|
| End bp | 4585432 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641728646 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_001883037 |
|---|
| Protein GI | 187730207 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.100391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTGT CTCCTTATTT GCAAGAGGTG GCGAAGCGCC GCACTTTTGC CATTATTTCT
CACCCGGACG CCGGTAAAAC TACCATCACC GAGAAGGTGC TGCTGTTCGG ACAGGCCATT
CAGACCGCTG GTACAGTAAA AGGCCGTGGT TCCAACCAGC ACGCTAAGTC GGACTGGATG
GAGATGGAAA AGCAGCGTGG GATCTCCATT ACTACGTCTG TGATGCAGTT TCCGTATCAC
GATTGCCTGG TTAACCTGCT AGACACCCCG GGGCACGAAG ACTTCTCGGA AGATACCTAT
CGTACCCTGA CAGCGGTGGA CTGCTGCCTG ATGGTTATCG ACGCTGCAAA AGGTGTTGAA
GATCGTACCC GTAAGCTGAT GGAAGTTACC CGTCTGCGCG ACACGCCGAT CCTCACCTTT
ATGAACAAAC TTGACCGTGA TATCCGCGAC CCGATGGAAC TGCTCGATGA AGTTGAGAAC
GAGCTGAAAA TCGGCTGCGC ACCGATCACC TGGCCGATTG GCTGCGGCAA GCTGTTTAAA
GGCGTTTACC ACCTTTATAA AGACGAAACC TATCTTTATC AGAGCGGTAA AGGCCACACG
ATTCAGGAAG TCCGTATTGT TAAAGGGCTG AATAACCCGG ATCTCGACGC TGCGGTTGGT
GAAGATCTGG CACAGCAGCT ACGTGACGAA CTGGAACTGG TGAAAGGCGC GTCTAACGAG
TTCGACAAAG AACTGTTCCT TGCGGGCGAA ATCACTCCGG TATTCTTCGG TACTGCGCTG
GGTAACTTCG GCGTTGATCA TATGCTGGAT GGCCTGGTGG AGTGGGCCCC TGCGCCGATG
CCGCGTCAGA CTGATACCCG TACCGTAGAG GCGAGCGAAG ACAAATTTAC CGGCTTCGTA
TTTAAAATTC AGGCCAATAT GGACCCGAAA CATCGCGACC GCGTGGCGTT TATGCGCGTA
GTATCCGGTA AATATGAAAA AGGCATGAAG CTGCGCCAGG TGCGTACTGC GAAAGATGTG
GTTATCTCCG ACGCGCTGAC CTTTATGGCG GGCGACCGTT CGCACGTTGA AGAAGCGTAT
CCGGGTGATA TCCTCGGCCT GCACAACCAC GGCACTATTC AGATCGGCGA CACCTTTACC
CAGGGGGAGA TGATGAAGTT CACCGGTATT CCGAACTTCG CACCAGAACT GTTCCGTCGT
ATCCGCCTGA AAGATCCGCT GAAGCAAAAA CAGCTGCTCA AAGGGCTGGT ACAGCTTTCC
GAAGAGGGCG CGGTGCAGGT GTTCCGTCCG ATCTCCAACA ACGATTTGAT CGTTGGTGCT
GTTGGTGTGC TGCAGTTTGA TGTGGTGGTA TCGCGCCTGA AGAGCGAATA CAACGTTGAA
GCAGTATATG AATCAGTCAA CGTTGCCACT GCCCGCTGGG TAGAATGTGC GGACGCGAAG
AAATTCGAAG AGTTCAAGCG TAAGAACGAA AGCCAACTGG CGCTTGATGG CGGCGATAAC
CTCGCTTACA TCGCTACCAG CATGGTCAAC CTGCGCCTGG CGCAGGAACG TTATCCCGAC
GTTCAGTTCC ACCAGACCCG CGAGCATTAA
|
|---|
| Protein sequence | MTLSPYLQEV AKRRTFAIIS HPDAGKTTIT EKVLLFGQAI QTAGTVKGRG SNQHAKSDWM
EMEKQRGISI TTSVMQFPYH DCLVNLLDTP GHEDFSEDTY RTLTAVDCCL MVIDAAKGVE
DRTRKLMEVT RLRDTPILTF MNKLDRDIRD PMELLDEVEN ELKIGCAPIT WPIGCGKLFK
GVYHLYKDET YLYQSGKGHT IQEVRIVKGL NNPDLDAAVG EDLAQQLRDE LELVKGASNE
FDKELFLAGE ITPVFFGTAL GNFGVDHMLD GLVEWAPAPM PRQTDTRTVE ASEDKFTGFV
FKIQANMDPK HRDRVAFMRV VSGKYEKGMK LRQVRTAKDV VISDALTFMA GDRSHVEEAY
PGDILGLHNH GTIQIGDTFT QGEMMKFTGI PNFAPELFRR IRLKDPLKQK QLLKGLVQLS
EEGAVQVFRP ISNNDLIVGA VGVLQFDVVV SRLKSEYNVE AVYESVNVAT ARWVECADAK
KFEEFKRKNE SQLALDGGDN LAYIATSMVN LRLAQERYPD VQFHQTREH
|
|---|
| |