| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4842 |
|---|
| Symbol | treR |
|---|
| ID | 6272435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 4512438 |
|---|
| End bp | 4513403 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641728580 |
|---|
| Product | trehalose repressor |
|---|
| Protein accession | YP_001882974 |
|---|
| Protein GI | 187730489 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR02405] trehalose operon repressor, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATC GGCTGACCAT CAAAGACATC GCGCGCTTAA GCGGCGTGGG GAAATCTACA
GTTTCCCGGG TGCTGAATAA CGAAAGCGGC GTGAGCCAGC GCACCCGCGA GCGTGTTGAA
GCAGTGATGA ATCAGCATGG ATTTTCCCCT TCCCGCTCTG CGCGCGCTAT GCGTGGGCAA
AGCGATAAAG TGGTCGCCAT CATTGTTACC CGCCTGGATT CGTTGTCAGA AAATCTCGCC
GTTCAAACCA TGCTGCCAGA GTTCTATGAA CAAGGTTACG ACCCAATCAT GATGGAAAGT
CAGTTTTCCC CGCAATTAGT TGCCGAACAT TTGGGGGTGC TGAAACGGCG TAATATCGAC
GGCGTAGTGC TGTTCGGTTT TACCGGCATA ACAGAAGAAA TGTTAGCCCA CTGGCAGTCA
TCGCTGGTTC TGCTGGCGCG TGACGCAAAA GGCTTTGCTT CGGTCTGTTA TGACGACGAA
GGGGCAATCA AGATCCTGAT GCAACGGCTG TATGACCAGG GGCATCGTAA TATCAGTTAT
CTCGGCGTGC CGCACAGTGA CGTGACGACC GGTAAGCGAC GTCACGAAGC CTACCTGGCG
TTCTGCAAAG CGCATAAACT GCATCCCGTT GCCGCTCTGC CAGGCCTTGC TATGAAGCAA
GGCTATGAGA ACGTAGCAAA AGTGATTACG CCTGAAACTA CCGCCTTACT GTGCGCAACC
GACACGCTGG CACTTGGCGC AAGTAAATAC CTGCAAGAGC AACGCATCGA CACCTTGCAA
CTGGCGAGCG TCGGTAATAC GCCGTTAATA AAATTCCTCC ATCCGGAGAT CGTCACCGTA
GATCCCGGTT ACGCCGAAGC TGGACGCCAG GCGGCCTGCC AGTTGATCGC ACAGGTAACC
GGGCGCAGCG AACCGCAACA AATCATCATC CCCGCCACCC TGTCCAGATC GTTTCCTGAA
CGATAA
|
|---|
| Protein sequence | MQNRLTIKDI ARLSGVGKST VSRVLNNESG VSQRTRERVE AVMNQHGFSP SRSARAMRGQ
SDKVVAIIVT RLDSLSENLA VQTMLPEFYE QGYDPIMMES QFSPQLVAEH LGVLKRRNID
GVVLFGFTGI TEEMLAHWQS SLVLLARDAK GFASVCYDDE GAIKILMQRL YDQGHRNISY
LGVPHSDVTT GKRRHEAYLA FCKAHKLHPV AALPGLAMKQ GYENVAKVIT PETTALLCAT
DTLALGASKY LQEQRIDTLQ LASVGNTPLI KFLHPEIVTV DPGYAEAGRQ AACQLIAQVT
GRSEPQQIII PATLSRSFPE R
|
|---|
| |