| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4796 |
|---|
| Symbol | fimF |
|---|
| ID | 6272752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 4470054 |
|---|
| End bp | 4470584 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641728543 |
|---|
| Product | fimbrial protein FimF |
|---|
| Protein accession | YP_001882938 |
|---|
| Protein GI | 187732575 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAACA AACCTTTTTA TCTTCTGTGC GCTTTTTTGT GGCTGGCGGT AAGTCGCGTT
TTGGCTGCGG ATAGCACGAT TACTATCCGC GGCTATGTCA GAGATAACGG CTGTAGTGTG
GCCGCTGAAT CAACCAATTT TACTGTTGAT CTGATGGAAA ACGCGGCGAA GCAATTTAAC
AACATTGGTG CAACGACTCC TGTCGTTCCA TTTCGTATTT TGCTGTCACC CTGTGGTAAC
GCCGTTTCTG CCGTAAAGGT TGGGTTTACC GGCGTTGCAG ATAGCCACAA TGCCAACCTG
CTTGCACTTG AAAATACGGT GTCTGCGGCT TCGGGACTGG GAATACAGCT TCTGAATGAG
CAGCAAAATC AGATACCCCT TAATGCTCTA TCGTCCGCGA TTTCGTGGAC GACCCTGACG
CCGGGTAAAC CAAATACGTT GAATTTTTAC GCCCGGCTAA TGGCGACACA GGTGCCTGTC
ACTGCGGGGC ATATCAATGC CACGGCTACC TTCACTCTTG AATATCAGTA A
|
|---|
| Protein sequence | MRNKPFYLLC AFLWLAVSRV LAADSTITIR GYVRDNGCSV AAESTNFTVD LMENAAKQFN
NIGATTPVVP FRILLSPCGN AVSAVKVGFT GVADSHNANL LALENTVSAA SGLGIQLLNE
QQNQIPLNAL SSAISWTTLT PGKPNTLNFY ARLMATQVPV TAGHINATAT FTLEYQ
|
|---|
| |