Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E4680 |
Symbol | blc |
ID | 6269514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 4373680 |
End bp | 4374213 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641728446 |
Product | outer membrane lipoprotein Blc |
Protein accession | YP_001882843 |
Protein GI | 187733696 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3040] Bacterial lipocalin |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCCTGC TCCCTCTCGT TGCCGCAGCG ACAGCTGCAT TTCTGGTCGT TGCCTGCAGT TCTCCTACGC CGCCGCGTGG CGTGACAGTA GTGAATAATT TCGACGCTAA ACGCTATCTC GGTACCTGGT ATGAGATTGC CCGTTTTGAT CACCGTTTTG AACGTGGACT GGAAAAAGTC ACCGCAACAT ACAGTCTGCG TGATGGCGGC GGCCTGAATG TCATCAATAA AGGCTATAAC CCTGACAGAG AAATGTGGCA GCAGAGTGAA GGGAAAGCGT ACTTTACCGG CGCACCAACA CGCGCTGCGC TGAAAGTGTC ATTCTTTGGT CCTTTCTATG GCGGTTATAA CGTCATTGCA CTTGATCGGG AATACCGCCA TGCGCTGGTT TGCGGCCCGG ACCGCGACTA CCTGTGGATA CTCTCCCGCA CGCCAACCAT TTCTGACGAA GTGAAACAGG AGATGCTGGC AGTCGCGACC CGGGAAGGGT TTGATGTCAG TAAGTTTATT TGGGTACAGC AGCCCGGTAG TTAG
|
Protein sequence | MRLLPLVAAA TAAFLVVACS SPTPPRGVTV VNNFDAKRYL GTWYEIARFD HRFERGLEKV TATYSLRDGG GLNVINKGYN PDREMWQQSE GKAYFTGAPT RAALKVSFFG PFYGGYNVIA LDREYRHALV CGPDRDYLWI LSRTPTISDE VKQEMLAVAT REGFDVSKFI WVQQPGS
|
| |