| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4594 |
|---|
| Symbol | nrfD |
|---|
| ID | 6269599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 4290439 |
|---|
| End bp | 4291395 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641728370 |
|---|
| Product | nrfD protein |
|---|
| Protein accession | YP_001882768 |
|---|
| Protein GI | 187733256 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
|---|
| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCAGA CTTCCGCATT TCATTTTGAA TCGCTGGTGT GGGACTGGCC GATTGCCATC
TACCTGTTTT TGATTGGTAT TTCTGCCGGT CTGGTGACGC TGGCCGTGCT GTTACGTCGC
TTCTACCCGC AGGCGGGCGG TGCAGACAGT ACGTTGCTGC GCACCACGCT GATTGTCGGG
CCGGGCGCGG TGATCCTCGG TCTGTTGATC CTCGTCTTCC ACCTGACAAG ACCGTGGACC
TTCTGGAAGC TGATGTTCCA CTACAGTTTT ACCTCGGTGA TGTCGATGGG GGTGATGCTG
TTTGAGCTTT ACATGGTGGT GCTGGTGCTG TGGCTGGCGA AAATCTTTGA ACATGATTTG
CTTGCCCTGC AACAACGCTG GTTGCCGAAG CTGGGGATCG TGCAAAAGGT TCTGAGCCTG
CTGACGCCCG TTCATCGCGG ACTGGAAACG CTGATGCTGG TGTTGGCGGT GCTGCTGGGG
GCTTATACCG GCTTTCTGCT GTCGGCGCTG AAATCGTATC CGTTCCTCAA TAACCCGATC
CTGCCGGTGC TGTTCCTCTT CTCCGGCATC TCGTCCGGTG CGGCGGTGGC GCTGATCGCC
ATGGCGATAC GCCAACGCAG TAACCCGCAT TCCACGGAAG CGCACTTTGT TCACCGGATG
GAAATCCCCG TGGTATGGGG TGAAATCTTC CTGCTGGTGG CGTTTTTTGT CGGTCTGGCG
CTGGGCGATG ACGGTAAAGT TCGTGCGCTG GTGGCGGCAT TAGGTGGCGG TTTCTGGACG
TGGTGGTTCT GGCTTGGTGT CGCCGGGCTG GGGCTGATTG TGCCAATGTT GCTCAAATCG
TGGGTCAATC GCAGTTCCGG CATTCCTGCC GTGCTGGCGG CGTGTGGGGC CAGTCTGGTC
GGCGTGTTGA TGCTGCGCTT TTTCATTCTC TACGCCGGAC AGTTGACGGT GGCGTAA
|
|---|
| Protein sequence | MTQTSAFHFE SLVWDWPIAI YLFLIGISAG LVTLAVLLRR FYPQAGGADS TLLRTTLIVG
PGAVILGLLI LVFHLTRPWT FWKLMFHYSF TSVMSMGVML FELYMVVLVL WLAKIFEHDL
LALQQRWLPK LGIVQKVLSL LTPVHRGLET LMLVLAVLLG AYTGFLLSAL KSYPFLNNPI
LPVLFLFSGI SSGAAVALIA MAIRQRSNPH STEAHFVHRM EIPVVWGEIF LLVAFFVGLA
LGDDGKVRAL VAALGGGFWT WWFWLGVAGL GLIVPMLLKS WVNRSSGIPA VLAACGASLV
GVLMLRFFIL YAGQLTVA
|
|---|
| |