| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4591 |
|---|
| Symbol | nrfA |
|---|
| ID | 6271659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 4287727 |
|---|
| End bp | 4289163 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641728367 |
|---|
| Product | cytochrome c552 |
|---|
| Protein accession | YP_001882765 |
|---|
| Protein GI | 187730383 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
|---|
| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGGA TAAAAATAAA CGCACGCCGT ATCTTCAGCT TATTGATTCC TTTTTTCTTT
TTCACTTCTG TTCACGCTGA ACAAACGGCA GCTCCCGCAA AACCTGTAAC TGTGGAAGCG
AAGAATGAAA CCTTTGCCCC GCAGCATCCC GATCAATATC TCTCCTGGAA AGCCACCTCG
GAACAGTCAG AGCGTGTTGA CGCCCTGGCG GAAGATCCAC GGCTGGTGAT CCTGTGGGCG
GGGTATCCCT TCTCGCGCGA TTACAACAAG CCGCGTGGAC ATGCCTTTGC TGTGACCGAT
GTGCGTGAAA CCCTGCGTAC CGGTGCGCCG AAAAACGCTG AAGATGGTCC GCTACCGATG
GCGTGCTGGA GTTGTAAAAG CCCGGATGTG GCGCGTCTGA TCCAGAAAGA CGGCGAAGAT
GGCTACTTCC ACGGTAAGTG GGCGCGCGGC GGCCCGGAAA TCGTCAACAA CTTAGGTTGT
GCCGACTGCC ATAACACCGC CTCACCAGAG TTCGCCAAAG GCAAACCGGA GTTAACCCTT
TCCCGTCCGT ATGCGGCTCG CGCGATGGAA GCCATTGGTA AACCTTTTGA GAAAGCCGGA
CGTTTCGACC AGCAATCGAT GGTTTGCGGT CAGTGCCATG TGGAGTATTA CTTCGACGGC
AAAAACAAAG CGGTTAAATT CCCGTGGGAT GACGGCATGA AAGTCGAAAA TATGGAGCAG
TATTACGACA AAATTGCCTT CTCTGACTGG ACTAACTCCC TGTCGAAAAC GCCAATGCTG
AAAGCGCAGC ACCCGGAATA TGAAACCTGG ACAGCGGGCA TTCACGGTAA AAACAACGTG
ACCTGTATCG ACTGCCATAT GCCAAAAGTG CAGAACGCCG AAGGCAAACT CTACACCGAC
CATAAAATTG GTAATCCGTT TGATAACTTC GCCCAGACTT GTGCGAACTG CCATACCCAG
GACAAAGCTG CCTTGCAAAA AGTGGTCGCG GAACGTAAGC AGTCGATTAA CGACCTGAAA
ATCAAGGTTG AAGATCAACT GGTTCACGCT CACTTCGAAG CGAAAGCAGC GCTGGATGCA
GGCGCGACGG AAGCTGAAAT GAAGCCAATT CAGGACGATA TCCGTCATGC CCAGTGGCGC
TGGGATCTGG CGATCGCTTC CCACGGCATT CATATGCACG CACCGGAAGA AGGTTTACGG
ATGCTCGGTA CGGCGATGGA TAAAGCGGCG GATGCACGCA CCAAACTGGC GCGCCTGCTG
GCGACCAAAG GCATCACCCA TGAAATCCAG ATCCCGGATA TCTCAACCAA AGAGAAAGCC
CAGCAGGCCA TTGGCCTGAA CATGGAACAA ATCAAGGCCG AGAAGCAGGA CTTCATCAAA
ACGGTGATCC CGCAGTGGGA AGAACAGGCA CGTAAAAACG GTCTGTTAAG CCAATAA
|
|---|
| Protein sequence | MTRIKINARR IFSLLIPFFF FTSVHAEQTA APAKPVTVEA KNETFAPQHP DQYLSWKATS
EQSERVDALA EDPRLVILWA GYPFSRDYNK PRGHAFAVTD VRETLRTGAP KNAEDGPLPM
ACWSCKSPDV ARLIQKDGED GYFHGKWARG GPEIVNNLGC ADCHNTASPE FAKGKPELTL
SRPYAARAME AIGKPFEKAG RFDQQSMVCG QCHVEYYFDG KNKAVKFPWD DGMKVENMEQ
YYDKIAFSDW TNSLSKTPML KAQHPEYETW TAGIHGKNNV TCIDCHMPKV QNAEGKLYTD
HKIGNPFDNF AQTCANCHTQ DKAALQKVVA ERKQSINDLK IKVEDQLVHA HFEAKAALDA
GATEAEMKPI QDDIRHAQWR WDLAIASHGI HMHAPEEGLR MLGTAMDKAA DARTKLARLL
ATKGITHEIQ IPDISTKEKA QQAIGLNMEQ IKAEKQDFIK TVIPQWEEQA RKNGLLSQ
|
|---|
| |