| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4553 |
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| Symbol | dinF |
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| ID | 6268390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 4255194 |
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| End bp | 4256573 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641728335 |
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| Product | DNA-damage-inducible SOS response protein |
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| Protein accession | YP_001882733 |
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| Protein GI | 187734072 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCCAG GCGTCGCGGT TTGTTTTTCA TCTCTCTTCA TCAGGCTTGT CTGCATGGCA
TTCCTCACTT CATCTGATAA AGCACTCTGG CATCTCGCCT TACCCATGAT TTTCTCCAAT
ATCACCGTTC CGTTGCTGGG ACTGGTCGAT ACGGCGGTAA TTGGTCATCT TGATAGTCCA
GTTTATTTGG GCGGCGTGGC GGTTGGTGCA ACGGCGACCA GCTTTCTCTT TATGCTGTTG
CTGTTTTTAC GCATGAGCAC CACCGGGCTG ACTGCGCAGG CTTATGGTGC CAAAAATCCT
CAGGCATTAG CCCGTGCGCT GGTGCAACCG TTGCTGTTGG CGTTGGGGGC AGGGGCGTTA
ATTGCGCTGC TGCGTACACC GATTATCGAT CTGGCACTGC ATATTGTTGG CGGTAGTGAA
GCAGTCCTGG AACAGGCGCG GCGCTTTCTT GAAATCCGCT GGTTAAGCGC ACCGGCGTCG
CTGGCGAATC TGGTATTACT TGGTTGGTTA CTCGGCGTGC AATATGCCCG TGCGCCAGTA
ATTTTGTTAG TGGTCGGCAA TATCCTCAAC ATTGTGCTGG ATGTCTGGCT GGTGATGGGG
CTGCATATGA ACGTGCAGGG CGCGGCGCTG GCGACGGTTA TTGCGGAATA TGCAACATTG
CTGATTGGTC TGCTAATGGT GCGTAAAATC CTCAAACTAC GCGGAATTTC CGGCGAAATG
CTGAAAACTG CCTGGCGAGG AAACTTCCGT CGCTTGCTGG CGCTTAACCG CGATATCATG
CTGCGTTCGC TGTTGTTGCA ACTCTGTTTC GGCGCGATCA CCGTACTTGG TGCGCGACTG
GGGAGTGACA TTATCGCTGT TAACGCGGTT CTGATGACGC TACTCACCTT TACCGCCTAT
GCGCTGGATG GTTTTGCCTA CGCGGTTGAA GCGCATTCCG GTCAGGCGTA CGGTGCGCGC
GACGGTAGCC AGTTGCTGGA TGTCTGGCGG GCAGCGTGCC GCCAGTCGGG GATCGTAGCG
TTACTGTTTT CGGTAGTTTA TTTGCTGGCA GGGGAACACA TCATTGCGTT GCTGACGTCG
TTAACCCAGA TTCAGCAGCT GGCCGACCGC TATCTTATCT GGCAGGTGAT TTTGCCGTTG
GTTGGCGTCT GGTGTTATCT GCTGGACGGC ATGTTTATAG GCGCAACGCG CGCAGCCGAA
ATGCGTAACA GTATGGCGGT GGCCGCCGCA GGTTTTGCGT TGACGCTCCT TACGCTGCCG
TGGCTGGGTA ATCATGCTTT GTGGCTGGCG TTAACCGTCT TTCTGGCGTT GCGCGGGCTT
TCTCTGGCGG CTATCTGGCG GCGTCACTGG CGCAACGGTA CCTGGTTTGC CGCAACGTGA
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| Protein sequence | MPPGVAVCFS SLFIRLVCMA FLTSSDKALW HLALPMIFSN ITVPLLGLVD TAVIGHLDSP
VYLGGVAVGA TATSFLFMLL LFLRMSTTGL TAQAYGAKNP QALARALVQP LLLALGAGAL
IALLRTPIID LALHIVGGSE AVLEQARRFL EIRWLSAPAS LANLVLLGWL LGVQYARAPV
ILLVVGNILN IVLDVWLVMG LHMNVQGAAL ATVIAEYATL LIGLLMVRKI LKLRGISGEM
LKTAWRGNFR RLLALNRDIM LRSLLLQLCF GAITVLGARL GSDIIAVNAV LMTLLTFTAY
ALDGFAYAVE AHSGQAYGAR DGSQLLDVWR AACRQSGIVA LLFSVVYLLA GEHIIALLTS
LTQIQQLADR YLIWQVILPL VGVWCYLLDG MFIGATRAAE MRNSMAVAAA GFALTLLTLP
WLGNHALWLA LTVFLALRGL SLAAIWRRHW RNGTWFAAT
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