| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4409 |
|---|
| Symbol | glpF |
|---|
| ID | 6272963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 4113350 |
|---|
| End bp | 4114195 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641728209 |
|---|
| Product | glycerol uptake facilitator protein |
|---|
| Protein accession | YP_001882622 |
|---|
| Protein GI | 187731553 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
|---|
| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.0436905 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAA CATCAACCTT GAAAGGCCAG TGCATTGCTG AATTCCTCGG TACCGGGTTG
TTGATTTTTT TCGGTGTGGG TTGCGTTGCA GCACTAAAAG TCGCTGGTGC GTCTTTTGGT
CTGTGGGAAA TCAGTGTCAT TTGGGGACTG GGGGTGGCAA TGGCTATCTA CCTGACCGCA
GGGGTTTCCG GCGCGCATCT TAATCCCGCT GTTACCATTG CATTGTGGCT GTTTGCCTGT
TTCGACAAGC GCAAAGTTAT TCCTTTTATC GTTTCACAAG TTGCCGGCGC TTTCTGTGCT
GCGGCTTTAG TTTACGGGCT TTACTACAAT TTATTTTTCG ACTTCGAGCA GACTCATCAC
ATTGTTCGCG GCAGCGTTGA AAGTGTTGAT CTGGCAGGCA CTTTCTCTAC TTACCCTAAT
CCTCATATCA ATTTTGTGCA GGCTTTCGCA GTTGAGATGG TGATTACCGC TATTCTGATG
GGGCTGATCC TGGCGTTAAC GGACGATGGC AACGGTGTAC CACGCGGCCC TTTGGCTCCC
TTGCTGATTG GTCTACTGAT TGCGGTCATT GGCGCATCTA TGGGCCCATT GACGGGTTTT
GCCATGAACC CAGCGCGTGA CTTCGGTCCG AAAGTCTTTG CCTGGCTGGC GGGCTGGGGC
AATGTCGCCT TTACCGGCGG CAGAGACATT CCTTACTTCC TGGTGCCGCT TTTTGGCCCT
ATCGTTGGCG CGATTGTAGG TGCATTTGCC TACCGCAAAC TGATTGGTCG CCATTTGCCT
TGCGATATCT GTGTTGTGGA AGAAAAGGAA ACCACAACTC CTTCAGAACA AAAAGCTTCG
CTGTAA
|
|---|
| Protein sequence | MSQTSTLKGQ CIAEFLGTGL LIFFGVGCVA ALKVAGASFG LWEISVIWGL GVAMAIYLTA
GVSGAHLNPA VTIALWLFAC FDKRKVIPFI VSQVAGAFCA AALVYGLYYN LFFDFEQTHH
IVRGSVESVD LAGTFSTYPN PHINFVQAFA VEMVITAILM GLILALTDDG NGVPRGPLAP
LLIGLLIAVI GASMGPLTGF AMNPARDFGP KVFAWLAGWG NVAFTGGRDI PYFLVPLFGP
IVGAIVGAFA YRKLIGRHLP CDICVVEEKE TTTPSEQKAS L
|
|---|
| |