| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4264 |
|---|
| Symbol | hemC |
|---|
| ID | 6269436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 3986632 |
|---|
| End bp | 3987594 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641728078 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_001882498 |
|---|
| Protein GI | 187733255 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAATGA CGGTAACAAG CATGTTAGAC AATGTTTTAA GAATTGCCAC ACGCCAAAGC
CCACTTGCAC TCTGGCAGGC ACACTATGTC AAAGACAAGT TGATGACGAG CCATCCGGGC
CTGGTCGTTG AACTGGTACC GATGGTGACG CGCGGCGATG TGATTCTTGA TACGCCGCTG
GCGAAAGTAG GCGGAAAAGG CTTATTTGTA AAAGAGCTGG AAGTCGCGCT CCTCGAAAAT
CGCGCCGATA TCGCCGTACA TTCAATGAAA GATGTGCCGG TTGAATTCCC GCAAGGTCTG
GGACTGGTCA CTATTTGTGA GCGTGAAGAT CCTCGCGATG CCTTTGTGTC CAATAACTAT
GACAGTCTGG ATGCGTTACC AGCAGGCAGT ATCGTCGGGA CGTCCAGTTT ACGTCGCCAG
TGCCAACTGG CTGAACGCCG CCCGGATCTG ATTATCCGCT CCCTGCGCGG CAACGTCGGC
ACTCGCCTGA GCAAACTAGA TAACGGCGAA TACGATGCCA TCATTCTTGC TGTAGCCGGA
CTAAAACGTT TAGGTCTGGA GTCCCGCATT CGCGCCGCGT TACCACCCGA GATTTCTCTT
CCAGCGGTAG GACAAGGTGC GGTCGGTATT GAATGCCGCC TTGATGATGC ACGCACTCGC
GAGCTGCTTG CCGCGCTGAA TCACCACGAA ACTGCACTGC GCGTTACCGC AGAACGCGCC
ATGAATACCC GTCTCGAAGG CGGATGTCAG GTGCCAATTG GTAGCTACGC CGAGCTTATT
GATGGTGAAA TCTGGCTGCG TGCGCTGGTC GGCGCGCCGG ACGGTTCGCA GATTATTCGC
GGTGAACGCC GCGGTGCGCC GCAAGATGCC GAACAAATGG GGATTTCGCT GGCAGAAGAG
CTACTGAATA ACGGCGCGCG CGAGATCCTC GCTGAAGTCT ATAACGGAGA CGCCCCGGCA
TGA
|
|---|
| Protein sequence | MIMTVTSMLD NVLRIATRQS PLALWQAHYV KDKLMTSHPG LVVELVPMVT RGDVILDTPL
AKVGGKGLFV KELEVALLEN RADIAVHSMK DVPVEFPQGL GLVTICERED PRDAFVSNNY
DSLDALPAGS IVGTSSLRRQ CQLAERRPDL IIRSLRGNVG TRLSKLDNGE YDAIILAVAG
LKRLGLESRI RAALPPEISL PAVGQGAVGI ECRLDDARTR ELLAALNHHE TALRVTAERA
MNTRLEGGCQ VPIGSYAELI DGEIWLRALV GAPDGSQIIR GERRGAPQDA EQMGISLAEE
LLNNGAREIL AEVYNGDAPA
|
|---|
| |