| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4226 |
|---|
| Symbol | gyrB |
|---|
| ID | 6272558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 3950537 |
|---|
| End bp | 3952951 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641728046 |
|---|
| Product | DNA gyrase subunit B |
|---|
| Protein accession | YP_001882467 |
|---|
| Protein GI | 187731654 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.765134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATT CTTATGACTC CTCCAGTATC AAAGTCCTGA AAGGGCTGGA TGCGGTGCGT
AAGCGCCCGG GTATGTATAT CGGCGACACG GATGACGGCA CCGGTCTGCA CCACATGGTA
TTCGAGGTGG TAGATAACGC TATCGACGAA GCGCTCGCGG GTCACTGTAA AGAAATTATC
GTCACCATTC ACGCCGATAA CTCTGTCTCT GTACAGGATG ACGGGCGTGG CATTCCGACC
GGTATTCACC CGGAAGAGGG CGTATCGGCG GCGGAAGTGA TCATGACCGT TCTGCACGCA
GGCGGTAAAT TTGACGATAA CTCCTATAAA GTGTCCGGCG GTCTGCACGG CGTTGGTGTT
TCGGTAGTAA ACGCCCTGTC GCAAAAACTG GAGCTGGTTA TCCAGCGCGA GGGTAAAATT
CACCGTCAGA TCTACGAACA CGGTGTACCG CAGGCTCCGC TGGCGGTTAC CGGCGAGACT
GAAAAAACCG GCACCATGGT GCGTTTCTGG CCCAGCCTCG AAACCTTCAC CAATGTGACC
GAGTTCGAAT ATGAAATTCT GGCGAAACGT CTGCGTGAGT TGTCGTTCCT CAACTCCGGC
GTTTCCATTC GTCTGCGCGA CAAGCGTGAC GGCAAAGAAG ACCACTTCCA CTATGAAGGC
GGCATCAAGG CGTTCGTTGA ATATCTGAAC AAGAACAAAA CGCCGATCCA TCCGAATATC
TTCTACTTCT CCACCGAAAA AGACGGTATT GGCGTCGAAG TGGCGTTGCA GTGGAACGAT
GGCTTCCAGG AAAACATCTA CTGCTTTACC AACAACATTC CGCAGCGTGA CGGCGGTACT
CACCTGGCAG GCTTCCGTGC GGCGATGACC CGTACCCTGA ACGCCTACAT GGACAAAGAA
GGCTACAGCA AAAAAGCCAA AGTCAGCGCC ACTGGTGACG ATGCGCGTGA AGGCCTGATT
GCGGTCGTTT CCGTAAAAGT GCCGGACCCG AAATTCTCCT CCCAGACCAA AGACAAACTG
GTTTCTTCTG AGGTGAAATC GGCGGTTGAA CAGCAGATGA ACGAACTGCT GGCAGAATAC
CTGCTGGAAA ACCCAACCGA CGCGAAAATC GTGGTTGGCA AAATTATCGA TGCTGCCCGT
GCCCGTGAAG CGGCGCGTCG CGCGCGTGAA ATGACCCGCC GTAAAGGTGC GCTCGACTTA
GCGGGCCTGC CGGGCAAACT GGCAGACTGC CAGGAACGCG ATCCGGCGCT TTCCGAACTG
TACCTGGTGG AAGGGGACTC CGCGGGCGGC TCTGCGAAGC AGGGGCGTAA CCGCAAGAAC
CAGGCGATTC TGCCGCTGAA GGGTAAAATC CTCAACGTTG AGAAAGCGCG CTTCGATAAG
ATGCTCTCTT CTCAGGAAGT GGCGACGCTT ATCACCGCGC TTGGCTGTGG TATCGGTCGT
GACGAGTACA ACCCGGACAA ACTGCGTTAT CACAGCATCA TCATCATGAC CGATGCGGAC
GTCGACGGCT CGCACATTCG TACGCTGCTG TTGACCTTCT TCTATCGTCA GATGCCGGAA
ATCGTTGAAC GCGGTCACGT CTACATCGCT CAGCCGCCGC TGTACAAAGT GAAGAAAGGC
AAGCAGGAAC AGTACATTAA AGACGACGAA GCGATGGATC AGTACCAGAT CTCTATCGCG
CTGGACGGCG CAACGCTGCA CACCAACGCC AGCGCACCGG CATTGGCTGG CGAAGCGTTA
GAGAAACTGG TGTCTGAGTA CAACGCGACG CAGAAAATGA TCAACCGCAT GGAGCGTCGT
TATCCGAAAG CAATGCTGAA AGAGCTTATC TATCAGCCGA CGCTGACGGA AGCCGACCTC
TCTGATGAGC AGACCGTTAC CCGCTGGGTG AACGCGCTGG TCAGCGAACT GAACGACAAA
GAACAGCACG GCAGCCAGTG GAAGTTTGAT GTCCACACCA ATGCCGAACA AAACCTGTTC
GAGCCGATTG TTCGCGTGCG TACCCACGGT GTGGATACTG ACTATCCGCT GGATCACGAA
TTTATCACTG GTGGCGAATA TCGTCGTATC TGCACGCTGG GTGAGAAACT GCGTGGCTTG
CTGGAAGAAG ATGCATTTAT CGAACGTGGC GAGCGTCGTC AGCCGGTAGC CAGCTTCGAG
CAGGCGCTGG ACTGGCTGGT GAAAGAGTCT CGTCGCGGTC TCTCCATCCA GCGTTATAAA
GGTCTGGGCG AGATGAACCC GGAACAGCTG TGGGAAACCA CCATGGACCC GGAAAGTCGT
CGTATGCTGC GCGTTACCGT TAAGGATGCG ATTGCCGCTG ACCTGTTGTT CACCACGCTG
ATGGGCGACG CCGTAGAACC GCGTCGTGCG TTTATTGAAG AGAACGCCCT GAAAGCGGCG
AATATTGATA TTTAA
|
|---|
| Protein sequence | MSNSYDSSSI KVLKGLDAVR KRPGMYIGDT DDGTGLHHMV FEVVDNAIDE ALAGHCKEII
VTIHADNSVS VQDDGRGIPT GIHPEEGVSA AEVIMTVLHA GGKFDDNSYK VSGGLHGVGV
SVVNALSQKL ELVIQREGKI HRQIYEHGVP QAPLAVTGET EKTGTMVRFW PSLETFTNVT
EFEYEILAKR LRELSFLNSG VSIRLRDKRD GKEDHFHYEG GIKAFVEYLN KNKTPIHPNI
FYFSTEKDGI GVEVALQWND GFQENIYCFT NNIPQRDGGT HLAGFRAAMT RTLNAYMDKE
GYSKKAKVSA TGDDAREGLI AVVSVKVPDP KFSSQTKDKL VSSEVKSAVE QQMNELLAEY
LLENPTDAKI VVGKIIDAAR AREAARRARE MTRRKGALDL AGLPGKLADC QERDPALSEL
YLVEGDSAGG SAKQGRNRKN QAILPLKGKI LNVEKARFDK MLSSQEVATL ITALGCGIGR
DEYNPDKLRY HSIIIMTDAD VDGSHIRTLL LTFFYRQMPE IVERGHVYIA QPPLYKVKKG
KQEQYIKDDE AMDQYQISIA LDGATLHTNA SAPALAGEAL EKLVSEYNAT QKMINRMERR
YPKAMLKELI YQPTLTEADL SDEQTVTRWV NALVSELNDK EQHGSQWKFD VHTNAEQNLF
EPIVRVRTHG VDTDYPLDHE FITGGEYRRI CTLGEKLRGL LEEDAFIERG ERRQPVASFE
QALDWLVKES RRGLSIQRYK GLGEMNPEQL WETTMDPESR RMLRVTVKDA IAADLLFTTL
MGDAVEPRRA FIEENALKAA NIDI
|
|---|
| |