| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4194 |
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| Symbol | lpfB |
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| ID | 6270977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 3919385 |
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| End bp | 3920116 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641728015 |
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| Product | long polar fimbrial operon protein LpfB |
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| Protein accession | YP_001882436 |
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| Protein GI | 187730700 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 51 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCAGAA AAAGTTGTTT AATCAGGCTC TTTAAAACAA CAGTTTCATG TAAGTTATTT
ACCGCGATTA TACTCAGCAT TTTTTTAGGC CAACCAGCAT TAACTTATGC AGGCGTTGTC
ATTGGTGGTA CGCGGGGGGT TTACTTAAGT AATAATGCTG ATAAATCTAT TTCTGTATTT
AGCAAAGAAG AAAAAATACC TTATCTCATC CAAGCTTGGG TAGATCCATT TAATAAAGAG
GATAAAAGCA AAGCGCCGTT TACCGTTATT CCGCCAGTAT CACGATTAGA ACCTTCGCAA
GAAAAAATAT TACGCATTAT TCACACCAAA GGTGTGTCAT TGCCTGATTA TCGCGAGTCA
GTCTTCTGGC TGAATATTAA AAATATTCCG CCATCAGCGA GCAACAAAGC GACGAACTCG
CTGGAAATAG CAGTAAAAAC GCGTATCAAG CTGTTCTGGC GACCAGCAAA TATCCGCCTT
ATTCCCGAAG ATGCTGCGCC GAAAGTGAAA TGGCGCCGGG AAGGGCGAAA TCTGATAGCA
GAGAATCCCA ACCCAATTCA TATCAGTGTG ATGGATGTCA TCGTTGATGG CCATGATGTG
CCCCTCAATA TGATCCGTCC TTTTGAAACG CTCACGTTAC CTTTACCTGC TAATTCTGCG
GGAGGCCAAA TGACCTGGCG ATTTATTAAT GATTACGGCG CAGTCAGTGA CCCGATAAAA
ATGACGCTGT AA
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| Protein sequence | MSRKSCLIRL FKTTVSCKLF TAIILSIFLG QPALTYAGVV IGGTRGVYLS NNADKSISVF
SKEEKIPYLI QAWVDPFNKE DKSKAPFTVI PPVSRLEPSQ EKILRIIHTK GVSLPDYRES
VFWLNIKNIP PSASNKATNS LEIAVKTRIK LFWRPANIRL IPEDAAPKVK WRREGRNLIA
ENPNPIHISV MDVIVDGHDV PLNMIRPFET LTLPLPANSA GGQMTWRFIN DYGAVSDPIK
MTL
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