Gene SbBS512_E4193 details

Gene Information

• Locus tag: SbBS512_E4193
• Symbol: lpfA
• ID: 6269306
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 3918765
• End bp: 3919337
• Gene Length: 573 bp
• Protein Length: 190 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641728014
• Product: long polar fimbrial operon protein LpfA
• Protein accession: YP_001882435
• Protein GI: 187731020
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3539] P pilus assembly protein, pilin FimA

Plasmid Coverage information

• Num covering plasmid clones: 53
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCGTA ATATTATAGG CGGTGCATTC ACTCTGGCAT CTCTAATGCT GGCCGGGCAT 
GCACTGGCAG AAGATGGTGT TGTTCACTTC GTCGGTGAAA TTGTCGACAC TACTTGTGAA 
GTTACCTCCG ATACAGCCGA TCAAATTGTC CCACTGGGTA AAGTCAGTAA AAATGCATTT 
TCAGGTGTAG GTAGTCTGGC GTCGCCACAG AAGTTCAGTA TTAAACTTGA AAATTGCCCG 
GCAACGTACA CTCAAGCAGC CGTTCGTTTT GATGGTACAG AAGCGCCTGG CGGCGACGGC 
GACCTGAAAG TGGGTACGCC GCTTACAGCA GGCAACCCTG GTGATTTTAC CGGTACAGGA 
CAAGCGATTG CGGCAACCGG CGTTGGTATT CGTATTTTTA ACCAGTCCGA TAATTCGCAG 
GTTAAACTTT ATAACGACTC TGCTTATACC GCTATCGATG CTGAAGGCAA GGCTGAAATG 
AAGTTTATTG CACGCTATGT GGCAACCAAT GCGACCGTAA CGGCTGGTAC GGCGAACGCT 
GATTCACAAT TTACTGTCGA ATATAAGAAA TAA 

 

Protein sequence

MKRNIIGGAF TLASLMLAGH ALAEDGVVHF VGEIVDTTCE VTSDTADQIV PLGKVSKNAF 
SGVGSLASPQ KFSIKLENCP ATYTQAAVRF DGTEAPGGDG DLKVGTPLTA GNPGDFTGTG 
QAIAATGVGI RIFNQSDNSQ VKLYNDSAYT AIDAEGKAEM KFIARYVATN ATVTAGTANA 
DSQFTVEYKK