Gene SbBS512_E4139 details

Gene Information

• Locus tag: SbBS512_E4139
• Symbol: rho
• ID: 6269206
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 3859999
• End bp: 3861258
• Gene Length: 1260 bp
• Protein Length: 419 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641727966
• Product: transcription termination factor Rho
• Protein accession: YP_001882393
• Protein GI: 187732455
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 40
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCTTA CCGAATTAAA GAATACGCCG GTTTCTGAGC TGATCACTCT CGGCGAAAAT 
ATGGGGCTGG AAAACCTGGC TCGTATGCGT AAGCAGGACA TTATTTTTGC CATCCTGAAG 
CAGCACGCAA AGAGTGGCGA AGATATCTTT GGTGATGGCG TACTGGAGAT ATTGCAGGAT 
GGATTTGGTT TCCTCCGTTC CGCAGACAGC TCCTACCTCG CCGGTCCTGA TGACATCTAC 
GTTTCCCCTA GCCAAATCCG CCGTTTCAAC CTCCGCACTG GTGATACCAT CTCTGGTAAG 
ATTCGCCCGC CGAAAGAAGG TGAACGCTAT TTTGCGCTGC TGAAAGTTAA CGAAGTTAAC 
TTCGACAAAC CTGAAAACGC CCGCAACAAA ATCCTCTTTG AGAACTTAAC CCCGCTGCAC 
GCAAACTCTC GTCTGCGTAT GGAACGTGGT AACGGTTCTA CGGAAGATTT AACCGCTCGC 
GTACTGGATC TGGCATCACC TATCGGTCGT GGTCAGCGTG GTCTGATTGT GGCACCGCCG 
AAAGCCGGTA AAACTATGCT GCTGCAGAAC ATTGCTCAGA GCATTGCTTA CAACCACCCG 
GATTGTGTGC TGATGGTTCT GCTGATCGAC GAACGTCCGG AAGAAGTAAC CGAGATGCAG 
CGTCTGGTAA AAGGTGAAGT TGTTGCTTCT ACCTTTGACG AACCCGCATC TCGCCACGTT 
CAGGTTGCGG AAATGGTGAT CGAGAAGGCC AAACGCCTGG TTGAGCACAA GAAAGACGTT 
ATCATTCTGC TCGACTCCAT CACTCGTCTG GCGCGCGCTT ACAACACTGT TGTTCCGGCG 
TCAGGTAAAG TGTTGACCGG TGGTGTGGAC GCCAATGCCC TTCATCGTCC GAAACGCTTC 
TTCGGTGCGG CGCGTAACGT GGAAGAGGGC GGCAGCCTGA CCATTATCGC GACGGCGCTT 
ATCGATACCG GTTCTAAAAT GGACGAAGTT ATTTACGAAG AGTTTAAAGG TACAGGCAAC 
ATGGAACTGC ACCTCTCTCG TAAGATCGCT GAAAAACGCG TCTTCCCGGC TATCGACTAC 
AACCGTTCCG GTACCCGTAA AGAAGAGCTG CTCACGACTC AGGAAGAACT GCAGAAAATG 
TGGATCCTGC GCAAAATCAT TCACCCGATG GGCGAAATCG ATGCAATGGA ATTCCTCATT 
AATAAACTGG CCATGACCAA GACCAATGAC GATTTCTTCG AAATGATGAA ACGCTCATAA 

 

Protein sequence

MNLTELKNTP VSELITLGEN MGLENLARMR KQDIIFAILK QHAKSGEDIF GDGVLEILQD 
GFGFLRSADS SYLAGPDDIY VSPSQIRRFN LRTGDTISGK IRPPKEGERY FALLKVNEVN 
FDKPENARNK ILFENLTPLH ANSRLRMERG NGSTEDLTAR VLDLASPIGR GQRGLIVAPP 
KAGKTMLLQN IAQSIAYNHP DCVLMVLLID ERPEEVTEMQ RLVKGEVVAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV IILLDSITRL ARAYNTVVPA SGKVLTGGVD ANALHRPKRF 
FGAARNVEEG GSLTIIATAL IDTGSKMDEV IYEEFKGTGN MELHLSRKIA EKRVFPAIDY 
NRSGTRKEEL LTTQEELQKM WILRKIIHPM GEIDAMEFLI NKLAMTKTND DFFEMMKRS