Gene SbBS512_E4130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E4130 
SymbolwecE 
ID6271945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp3851399 
End bp3852529 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content55% 
IMG OID641727958 
ProductTDP-4-oxo-6-deoxy-D-glucose transaminase 
Protein accessionYP_001882385 
Protein GI187731242 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 
TIGRFAM ID[TIGR02379] TDP-4-keto-6-deoxy-D-glucose transaminase 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCCAT TTAACGCACC GCCGGTGGTG GGAACCGAAC TCGACTATAT GCAGTCGGCA 
ATGGGTAGCG GCAAACTGTG TGGCGATGGC GGTTTTACCC GTCGCTGCCA GCAGTGGCTG 
GAGCAACGTT TTGGCAGCGC CAAAGTGTTA CTGACGCCGT CCTGCACCGC TTCGCTGGAG 
ATGGCGGCGC TGCTGCTCGA TATCCAGCCT GGCGATGAAG TGATCATGCC GAGCTACACC 
TTTGTCTCCA CCGCCAATGC CTTTGTGCTG CGTGGCGCGA AAATCGTCTT TGTGGATGTT 
CGCCCGGACA CCATGAACAT CGACGAAACG TTGATTGAAG CAGCGATCAC CGACAAAACG 
CGCGTTATCG TGCCGGTCCA TTACGCGGGT GTGGCCTGCG AAATGGACAC CATTATGGCG 
TTGGCGAAAA AGCATAATTT GTTTGTGGTG GAAGATGCCG CTCAGGGCGT GATGTCCACT 
TACAAAGGGC GTGCACTGGG AACCATTGGT CATATTGGCT GCTTTAGCTT CCATGAAACC 
AAAAACTACA CGGCGGGTGG TGAAGGCGGC GCGACGCTGA TTAACGATAA AGCGTTAATC 
GAACGAGCCG AGATCATCCG TGAAAAGGGC ACTAACCGCA GCCAGTTCTT CCGTGGTCAG 
GTCGATAAAT ATACCTGGCG CGATATTGGC TCCAGCTATT TGATGTCCGA TCTGCAAGCT 
GCATACCTGT GGGCGCAACT GGAAGCAGCG GATCGTATCA ACCAGCAACG TCTGGCGCTG 
TGGCAAAACT ACTACGATGC GTTAGCGCCT CTGGCGAAAG CCGGGCGTAT CGAGCTGCCG 
TCGATTCCCG ATGGCTGCGT GCAGAACGCG CATATGTTCT ACATTAAACT GCGGGATATT 
GATGACCGGA GCGCGTTGAT TAACTTTCTG AAAGAAGCGG AAATCATGGC GGTGTTTCAT 
TACATTCCGC TGCACGGTTG CCCTGCGGGG GAACACTTTG GTGAGTTCCA CGGTGAAGAT 
CGCTGCACCA CCAAAGAGAG CGAGCGCCTG CTGCGCCTGC CGCTGTTCTA CAACCTGTCG 
CCCGTCAATC AGCGTACGGT AATTGCGACT TTGTTGAACT ACTTCTCCTG A
 
Protein sequence
MIPFNAPPVV GTELDYMQSA MGSGKLCGDG GFTRRCQQWL EQRFGSAKVL LTPSCTASLE 
MAALLLDIQP GDEVIMPSYT FVSTANAFVL RGAKIVFVDV RPDTMNIDET LIEAAITDKT 
RVIVPVHYAG VACEMDTIMA LAKKHNLFVV EDAAQGVMST YKGRALGTIG HIGCFSFHET 
KNYTAGGEGG ATLINDKALI ERAEIIREKG TNRSQFFRGQ VDKYTWRDIG SSYLMSDLQA 
AYLWAQLEAA DRINQQRLAL WQNYYDALAP LAKAGRIELP SIPDGCVQNA HMFYIKLRDI 
DDRSALINFL KEAEIMAVFH YIPLHGCPAG EHFGEFHGED RCTTKESERL LRLPLFYNLS 
PVNQRTVIAT LLNYFS