Gene SbBS512_E4125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E4125 
Symbol 
ID6270180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp3845403 
End bp3846788 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content53% 
IMG OID641727953 
Productputative transport protein YifK 
Protein accessionYP_001882380 
Protein GI187733374 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1113] Gamma-aminobutyrate permease and related permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000000124535 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGATA ACAAACCAGA GCTACAGCGT GGGCTGGAAG CTCGACATAT CGAACTCATC 
GCCCTGGGGG GCACCATTGG CGTCGGCCTG TTTATGGGGG CCGCCAGTAC CTTGAAATGG
GCCGGGCCAT CCGTATTGTT GGCCTATATC ATCGCCGGGC TATTCGTCTT TTTCATCATG
CGTTCAATGG GCGAAATGTT GTTCCTCGAA CCGGTTACCG GTTCGTTCGC CGTTTATGCG
CATCGTTATA TGAGCCCGTT CTTTGGTTAT CTCACCGCCT GGTCTTATTG GTTTATGTGG
ATGGCGGTGG GGATCTCAGA AATCACCGCC ATTGGCGTTT ATGTCCAGTT CTGGTTCCCG
GAGATGGCGC AGTGGATACC CGCATTGATC GCAGTGGCGC TGGTGGCGTT GGCGAATCTG
GCGGCGGTGC GGTTGTACGG CGAAATCGAG TTCTGGTTCG CGATGATCAA AGTCACCACG
ATTATCGTGA TGATTGTCAT TGGCCTGGGC GTGATTTTCT TTGGCTTTGG CAATGGCGGG
CAGTCGATTG GTTTTAGCAA TCTCACAGAG CATGGCGGTT TCTTTGCGGG TGGCTGGAAA
GGGTTCCTGA CCGCGCTGTG TATTGTGGTG GCGTCCTACC AGGGCGTGGA GCTGATTGGC
ATTACTGCCG GTGAAGCGAA GAATCCGCAG GTGACGTTGC GCAGTGCCGT AGGCAAAGTG
CTGTGGCGGA TCCTGATTTT CTACGTAGGC GCGATTTTCG TTATCGTCAC CATCTTCCCG
TGGAATGAAA GTGGCAGCAA CGGCAGCCCG TTCGTACTGA CTTTTGCCAA AATCGGTATT
ACCGCAGCGG CGGGCATTAT CAACTTTGTG GTGCTGACGG CTGCGCTCTC TGGCTGTAAC
AGCGGCATGT ACAGTTGCGG ACGTATGCTC TACGCACTGG CGAAAAACCG TCAGTTACCG
GCGGCGATGG CGAAAGTTTC CCGTCACGGC GTACCAGTTG CGGGTGTGGC AGTATCTATT
GCTATTCTGC TAATTGGCTC ATGCCTGAAC TACATCATTC CCAATCCGCA GCGTGTGTTT
GTCTACGTCT ACAGTGCCAG CGTGCTTCCG GGGATGGTGC CATGGTTTGT GATATTGATA
AGCCAGCTGC GTTTTCGGCG TGCACATAAA GCGGCGATTG CCAGCCATCC GTTCCGCTCA
ATCCTGTTCC CGTGGGCCAA CTACGTAACA ATGGCATTCC TGATTTGCGT TTTGATCGGC
ATGTACTTTA ATGAAGATAC GCGTATGTCG CTGTTTGTTG GCATCATCTT TATGCTGGCG
GTGACGGCGA TTTATAAAGT TTTTGGCCTT AATCGCCACG GGAAAGCGCA TAAACTGGAG
GAATAA
 
Protein sequence
MADNKPELQR GLEARHIELI ALGGTIGVGL FMGAASTLKW AGPSVLLAYI IAGLFVFFIM 
RSMGEMLFLE PVTGSFAVYA HRYMSPFFGY LTAWSYWFMW MAVGISEITA IGVYVQFWFP
EMAQWIPALI AVALVALANL AAVRLYGEIE FWFAMIKVTT IIVMIVIGLG VIFFGFGNGG
QSIGFSNLTE HGGFFAGGWK GFLTALCIVV ASYQGVELIG ITAGEAKNPQ VTLRSAVGKV
LWRILIFYVG AIFVIVTIFP WNESGSNGSP FVLTFAKIGI TAAAGIINFV VLTAALSGCN
SGMYSCGRML YALAKNRQLP AAMAKVSRHG VPVAGVAVSI AILLIGSCLN YIIPNPQRVF
VYVYSASVLP GMVPWFVILI SQLRFRRAHK AAIASHPFRS ILFPWANYVT MAFLICVLIG
MYFNEDTRMS LFVGIIFMLA VTAIYKVFGL NRHGKAHKLE E