| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4117 |
|---|
| Symbol | |
|---|
| ID | 6272228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 3842452 |
|---|
| End bp | 3842829 |
|---|
| Gene Length | 378 bp |
|---|
| Protein Length | 125 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641727946 |
|---|
| Product | IS1 transposase orfB |
|---|
| Protein accession | YP_001882377 |
|---|
| Protein GI | 187732078 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1662] Transposase and inactivated derivatives, IS1 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.00102358 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAC AGTGGGGATA CGTCGGGGCT AAATCGCGCC AGCGCTGGCT GTTTTACGCG
TATGACAGGC TCCGGAAGAC GGTTGTTGCG CACGTATTCG GTGAACGCAC TATGGCGACG
CTGGGGCGTC TTATGAGCTT GCTGTCACCC TTTGACGTGG TGATATGGAT GACGGATGGC
TGGCCACTGT ATGAATCCCG CCTGAAGGGA AAGCTGCACG TAATCAGCAA GCGATATACG
CAGCGAATTG AGCGGCATAA CCTGAATCTG AGGCAGCACC TGGCACGGCT GGGACGGAAG
TCGCTGTCGT TCTCAAAATC GGTGGAGCTG CATGACAAAG TCATCGGGCA TTATCTGAAC
ATAAAACACT ATCAATAA
|
|---|
| Protein sequence | MDEQWGYVGA KSRQRWLFYA YDRLRKTVVA HVFGERTMAT LGRLMSLLSP FDVVIWMTDG
WPLYESRLKG KLHVISKRYT QRIERHNLNL RQHLARLGRK SLSFSKSVEL HDKVIGHYLN
IKHYQ
|
|---|
| |