Gene SbBS512_E4063 details

Gene Information

• Locus tag: SbBS512_E4063
• Symbol: radC
• ID: 6272248
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 3794713
• End bp: 3795381
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641727903
• Product: DNA repair protein RadC
• Protein accession: YP_001882335
• Protein GI: 187731500
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2003] DNA repair proteins
• TIGRFAM ID: [TIGR00608] DNA repair protein radc

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000000000000737579
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAAAACA ATTCACAGCT GTTGATGCCG CGCGAAAAAA TGCTGAAGTT TGGTATTAGC 
GCCTTAACGG ATGTCGAGCT GCTGGCGCTA TTTCTGCGTA CCGGAACGCG CGGTAAAGAT 
GTATTAACCC TGGCAAAAGA GATGCTGGAG AATTTCGGCT CTCTTTATGG CTTGTTAACC 
TCTGAATATG AACAATTTAG TGGCGTTCAT GGAATTGGCG TGGCGAAATT TGCCCAGTTA 
AAGGGGATTG CTGAACTGGC GCGGCGTTAC TACAACGTGC GGATGCGTGA AGAAAGCCCT 
TTACTCAGCC CGGAGATGAC GCGGGAATTT TTACAAAGCC AGCTTACGGG TGAGGAGCGG 
GAGATCTTTA TGGTGATCTT TCTCGACTCA CAACACCGGG TTATAACGCA TAGCCGTCTT 
TTTTCCGGCA CGCTAAACCA TGTTGAAGTC CATCCTCGGG AAATTATCCG CGAAGCGATA 
AAAATAAACG CCTCGGCGCT GATCCTTGCA CATAATCACC CTTCGGGTTG TGCTGAACCC 
AGTAAAGCGG ATAAACTCAT TACTGAACGG ATAATAAAGA GTTGTCAGTT CATGGATTTA 
CGCGTGCTCG ACCATATCGT GATTGGGCGT GGAGAGAATG TTTCTTTTGC CGAACGCGGC 
TGGATTTAA 

 

Protein sequence

MKNNSQLLMP REKMLKFGIS ALTDVELLAL FLRTGTRGKD VLTLAKEMLE NFGSLYGLLT 
SEYEQFSGVH GIGVAKFAQL KGIAELARRY YNVRMREESP LLSPEMTREF LQSQLTGEER 
EIFMVIFLDS QHRVITHSRL FSGTLNHVEV HPREIIREAI KINASALILA HNHPSGCAEP 
SKADKLITER IIKSCQFMDL RVLDHIVIGR GENVSFAERG WI