| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4048 |
|---|
| Symbol | rfaC |
|---|
| ID | 6273300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 3780766 |
|---|
| End bp | 3781746 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641727888 |
|---|
| Product | ADP-heptose:LPS heptosyl transferase I |
|---|
| Protein accession | YP_001882320 |
|---|
| Protein GI | 187733685 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
|---|
| TIGRFAM ID | [TIGR02193] lipopolysaccharide heptosyltransferase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0000904915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTTT TGATCGTTAA AACATCGTCG ATGGGCGATG TTCTCCATAC GTTGCCCGCA
CTCACTGATG CCCAGCAGGC AATCCCAGGG ATTAAGTTTG ACTGGGTGGT GGAAGAAGGG
TTCGCACAGA TTCCTTCCTG GCACGCTGCC GTTGAGCGAG TTATTCCTGT GGCAATACGT
CGCTGGCGTA AAGCCTGGTT CTCGGCCCCC ATAAAAGCTG AACGCAAAGC GTTTCGTGAA
GCGCTACAAG CAGAGAACTA TGACGCAGTT ATCGACGCTC AGGGGCTGGT AAAAAGCGCG
GCACTGGTGA CACGTCTGGC GCATGGCGTA AAGCATGGAT TGGACTGGCA AACCGCTCGC
GAACCTTTAG CCAGCCTGTT TTACAATTGT AAGCATCATA TTGCAAAACA GCAGCACGCC
GTAGAACGCA CCCGCGAACT GTTTGCCAAA AGTTTGGGCT ATAGCAAACC GCAAACCCAG
GGCGATTATG CTATCGCACA GCATTTTCTG ACGAACCTGC CTACAGATGC TGGCGAATAT
GCCGTATTTC TTCATGCGAC GACCCGTGAT GATAAACACT GGCCGGAAGA ACACTGGCGA
GAATTGATTG GTTTACTGGC TGATTCAGGA ATACGGATTA AACTTCCGTG GGGCGCGCCG
CATGAGGAAG AACGGGCGAA ACGACTGGCG GAAGGATTTG ATTATGTTGA AGTATTGCCG
AAGATGAGTC TGGAAGGCGT TGCCCGCGTG CTGGCCGGGG CTAAATTTGT AGTGTCGGTG
GATACGGGGT TAAGCCATTT AACGGCGGCA CTGGATAGAC CCAATATCAC GGTTTATGGA
CCAACCGATC CGGGATTAAT TGGTGGGTAT GGGAAGAATC AGATGGTTTG TAGGGCTCCG
GGGAATGAGT TGTCTCAATT GACAGCAAAT GCTGTTAAGC GATTCATTGA AGAAAACGCT
GAAAACGCTG CTATGATTTA A
|
|---|
| Protein sequence | MRVLIVKTSS MGDVLHTLPA LTDAQQAIPG IKFDWVVEEG FAQIPSWHAA VERVIPVAIR
RWRKAWFSAP IKAERKAFRE ALQAENYDAV IDAQGLVKSA ALVTRLAHGV KHGLDWQTAR
EPLASLFYNC KHHIAKQQHA VERTRELFAK SLGYSKPQTQ GDYAIAQHFL TNLPTDAGEY
AVFLHATTRD DKHWPEEHWR ELIGLLADSG IRIKLPWGAP HEEERAKRLA EGFDYVEVLP
KMSLEGVARV LAGAKFVVSV DTGLSHLTAA LDRPNITVYG PTDPGLIGGY GKNQMVCRAP
GNELSQLTAN AVKRFIEENA ENAAMI
|
|---|
| |