| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E4046 |
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| Symbol | rfaD |
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| ID | 6269388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 3778774 |
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| End bp | 3779706 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641727886 |
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| Product | ADP-L-glycero-D-mannoheptose-6-epimerase |
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| Protein accession | YP_001882318 |
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| Protein GI | 187732741 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00000308467 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCATCG TTACCGGCGG CGCGGGCTTT ATCGGCAGCA ACATCGTTAA GGCCCTGAAT
GATAAAGGCA TCACCGATAT TCTGGTGGTG GACAACCTGA AAGACGGCAC CAAGTTTGTG
AACCTGGTGG ATCTGGATAT CGCGGACTAT ATGGATAAGG AAGACTTCCT GATCCAGATT
ATGGCTGGCG AAGAGTTCGG CGATGTCGAA GCGATTTTCC ACGAAGGCGC ATGCTCTTCC
ACCACCGAGT GGGACGGCAA GTATATGATG GATAACAACT ATCAATACTC CAAGGAGCTG
CTGCACTACT GCCTGGAGCG CGAAATCCCG TTCCTGTACG CTTCTTCCGC AGCCACCTAC
GGCGGACGCA CCTCCGACTT TATTGAATCC CGCGAGTACG AAAAACCGTT GAACGTCTAC
GGTTACTCAA AATTCCTGTT TGATGAATAT GTTCGCCAAA TCCTGCCTGA AGCGAACTCG
CAGATTGTTG GCTTCCGCTA TTTCAACGTT TATGGACCGC GTGAAGGCCA TAAAGGCAGC
ATGGCGAGCG TCGCTTTCCA TCTCAACACT CAGCTTAACA ACGGTGAATC ACCGAAGCTG
TTTGAAGGTA GCGAGAACTT CAAACGTGAC TTCGTCTATG TGGGCGACGT GGCAGATGTA
AACCTGTGGT TCCTGGAAAA TGGCGTTTCC GGTATCTTCA ACCTCGGTAC TGGTCGTGCG
GAATCCTTCC AGGCCGTAGC AGATGCTACT CTGGCTTATC ACAAGAAAGG CCAGATCGAA
TACATTCCGT TCCCGGATAA GCTGAAAGGC CGCTACCAGG CGTTCACTCA GGCAGATCTG
ACAAATCTGC GCGCGGCGGG TTACGACAAA CCGTTCAAAA CCGTTGCTGA AGGTGTAACG
GAATACATGG CCTGGCTGAA TCGCGACGCA TAA
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| Protein sequence | MIIVTGGAGF IGSNIVKALN DKGITDILVV DNLKDGTKFV NLVDLDIADY MDKEDFLIQI
MAGEEFGDVE AIFHEGACSS TTEWDGKYMM DNNYQYSKEL LHYCLEREIP FLYASSAATY
GGRTSDFIES REYEKPLNVY GYSKFLFDEY VRQILPEANS QIVGFRYFNV YGPREGHKGS
MASVAFHLNT QLNNGESPKL FEGSENFKRD FVYVGDVADV NLWFLENGVS GIFNLGTGRA
ESFQAVADAT LAYHKKGQIE YIPFPDKLKG RYQAFTQADL TNLRAAGYDK PFKTVAEGVT
EYMAWLNRDA
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