Gene SbBS512_E3979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3979 
Symbol 
ID6271019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp3711388 
End bp3712590 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content51% 
IMG OID641727827 
Productmajor facilitator family transporter 
Protein accessionYP_001882260 
Protein GI187730474 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2223] Nitrate/nitrite transporter 
TIGRFAM ID[TIGR00890] Oxalate/Formate Antiporter 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.705111 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACCTT CAAATTATCA GCGTACCCGC TGGCTGACAC TCATCGGTAC TATCATTACC 
CAGTTTGCGC TGGGGTCGGT TTATACCTGG AGTCTGTTTA ATGGCGCGCT TTCTGCCAAG
CTGGATGCGC CGGTAAGCCA GGTCGCTTTC TCTTTCGGCT TGTTAAGTCT GGGGCTGGCA
ATTTCATCTT CTGTTGCGGG GAAATTACAG GAACGTTTTG GCGTTAAACG CGTCACTATG
GCTTCCGGCA TTTTGCTAGG ATTAGGCTTC TTCCTGACAG CGCATTCTGA CAACCTGATG
ATGCTGTGGT TAAGCGCCGG TGTGCTGGTC GGTCTGGCGG ATGGCGCGGG TTACCTGCTG
ACGCTCTCTA ACTGCGTGAA GTGGTTCCCG GAGCGTAAAG GTCTGATCTC CGCGTTCGCT
ATCGGTTCTT ATGGTCTTGG TAGCCTGGGT TTCAAATTTA TCGACACGCA GCTGCTGGAA
ACGGTGGGTC TGGAAAAAAC ATTTGTGATT TGGGGAGCGA TTGCGCTGGT GATGATTGTT
TTCGGCGCAA CGTTAATGAA AGACGCACCA AAACAGGAAG TGAAAACCAG CAATGGTGTG
GTGGAGAAAG ATTACACGCT GGCAGAGTCG ATGCGTAAAC CGCAGTACTG GATGTTAGCG
GTAATGTTCC TGACTGCCTG CATGAGCGGC CTGTACGTGA TTGGGGTAGC GAAAGATATC
GCCCAAAGTC TGGCACACCT TGATGTGGTT TCCGCAGCCA ATGCAGTAAC GGTTATTTCC
ATCGCTAACC TTTCAGGTCG TCTGGTGCTG GGCATTCTGT CTGACAAAAT TGCCCGTATC
CGTGTTATCA CCATTGGTCA GGTGATTTCG CTGGTGGGTA TGGCGGCCCT GCTGTTTGCA
CCATTAAATG CAGTGACGTT CTTTGCAGCG ATTGCCTGCG TGGCATTTAA CTTTGGCGGC
ACTATTACCG TCTTTCCATC ACTGGTCAGT GAGTTCTTCG GCCTCAATAA CCTGGCGAAA
AACTACGGTG TGATTTACCT CGGTTTCGGT ATCGGTAGCA TTTTTGGTTC GATTATCGCC
TCACTGTTTG GCGGTTTCTA TGTGACCTTC TACGTGATTT TCGCCCTGCT GATTCTGTCA
TTGGCGCTTT CTACGACGAT TCGTCAGCCA GAGCAGAAAA TGTTGCGTGA GGCGCATATT
TAG
 
Protein sequence
MTPSNYQRTR WLTLIGTIIT QFALGSVYTW SLFNGALSAK LDAPVSQVAF SFGLLSLGLA 
ISSSVAGKLQ ERFGVKRVTM ASGILLGLGF FLTAHSDNLM MLWLSAGVLV GLADGAGYLL
TLSNCVKWFP ERKGLISAFA IGSYGLGSLG FKFIDTQLLE TVGLEKTFVI WGAIALVMIV
FGATLMKDAP KQEVKTSNGV VEKDYTLAES MRKPQYWMLA VMFLTACMSG LYVIGVAKDI
AQSLAHLDVV SAANAVTVIS IANLSGRLVL GILSDKIARI RVITIGQVIS LVGMAALLFA
PLNAVTFFAA IACVAFNFGG TITVFPSLVS EFFGLNNLAK NYGVIYLGFG IGSIFGSIIA
SLFGGFYVTF YVIFALLILS LALSTTIRQP EQKMLREAHI