Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3978 |
Symbol | |
ID | 6272086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 3710462 |
End bp | 3711160 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641727826 |
Product | hypothetical protein |
Protein accession | YP_001882259 |
Protein GI | 187731056 |
COG category | [N] Cell motility |
COG ID | [COG5571] Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCATAA AAAAAAGCGG TGGTCGCTGG CAGCTAAGCC TGCTGGCGAG CGTGGTAATC AGTGCCTTTT TTCTCAACAC AGCTTACGCC TGGCAACAAG AATATATCGT TGATACGCAA CCCGGACATT CCACAGAGCG TTACACCTGG GATAGTGATC ATCAACCTGA TTACAACGAT ATTTTGTCGC AACGTATTCA AAGTAGCCAA AGGGCGCTGG GACTGGAAGT CAATCTGGCG GAAGAAACTC CTGTGGATGT GACCAGCAGT ATGAGTATGG GCTGGAATTT TCCTTTATAT GAACAGGTTA CAACCGGCCC GGTCGCGGCA TTACATTACG ATGGCACAAC CACCTCGATG TATAACGAGT TTGGCGACAG TACTACCACG CTGACCGATC CGTTATGGCA TGCCAGCGTG AGTAGCTTAG GCTGGCGTGT TGACTCCCGG CTTGGCGATC TCCGACCCTG GGCGCAAATC AGCTATAACC AGCAATTTGG CGAGAATATC TGGAAGGCGC AATCAGGCCT GAGCCGGATG ACGGCGACAA ACCAGAACGG CAACTGGCTG GATGTCACCG TAGGCGCTGA TATGTTGCTC AATCAAAATA TTGCCGCCTA TGCCGCGCTA ACTCAGGCAG AAAATACCAC TAATAATAGC GACTATCTGT ATACGATGGG GGTTAGCGCC AGATTTTAA
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Protein sequence | MIIKKSGGRW QLSLLASVVI SAFFLNTAYA WQQEYIVDTQ PGHSTERYTW DSDHQPDYND ILSQRIQSSQ RALGLEVNLA EETPVDVTSS MSMGWNFPLY EQVTTGPVAA LHYDGTTTSM YNEFGDSTTT LTDPLWHASV SSLGWRVDSR LGDLRPWAQI SYNQQFGENI WKAQSGLSRM TATNQNGNWL DVTVGADMLL NQNIAAYAAL TQAENTTNNS DYLYTMGVSA RF
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