Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3956 |
Symbol | xylF |
ID | 6268488 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3691545 |
End bp | 3692552 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641727805 |
Product | D-xylose transporter subunit XylF |
Protein accession | YP_001882238 |
Protein GI | 187732099 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCATTCT ATTTCAGGAA GGAGTGTCCG TTAAACTCAG GCTACCTCAA CATTCTACTC ACCCTTTGCA CCTCACTTCT GCTTACCAAC GTTGCGGCAC ACGCCAAAGA AGTCAAAATA GGTATGGCGA TTGATGATCT ACGTCTTGAA CGCTGGCAAA AAGATCGAGA TATTTTTGTG AAAAAGGCTG AATCTCTCGG TGCGAAAGTA TTTGTACAGT CTGCAAATGG CAATGGAGAA ACACAAATGT CGCAGATTGA AAACATGATT AACCGGGGTG TCGATGTTCT TGTCATTATT CCGTATAACG GCCAGGTATT AAGTAACGTT GTAAAAGAAG CCAAACAAGA AGGTATTAAA GTATTAGCTT ACGACCGTAT GATTAACGAT GCGGATATCG ATTTTTATAT TTCTTTCGAT AACGAAAAAG TCGGTGAACT GCAGGCAAAA GCCCTGGTCG ATATTGTTCC GCAAGGTAAT TACTTCCTGA TGGGCGGCTC GCCGGTAGAT AACAACGCCA AGCTGTTCCG CGCCGGACAA ATGAAAGTGT TAAAACCTTA CGTTGATTCC GGAAAAATTA AAGTCGTTGG TGACCAATGG GTTGATGGCT GGTTACCGGA AAACGCGCTA ACCGCCAATA ATAACAAAAT TGATGCTGTA GTTGCCTCAA ACGATGCCAC CGCAGGTGGG GCAATTCAGG CATTAAGCGC GCAAGGTTTA TCAGGGAAAG TAGCAATTTC CGGCCAGGAT GCGGATCTCG CAGGTATTAA ACGTATTGCT GCCGGTACGC AAACTATGAC GGTGTATAAA CCTATTACAT TGCTGGCAAA TACTGCCGCA GAAATTGCCG TTGAATTGGG CAATGGTCAG GAGCCAAAAG CAGATACCTC ACTGAATAAT GGCCTGAAAG ATGTCCCCTC CCGCCTCCTG ACACCGATCG ATGTGAATAA AAACAACATC AAAGATACGG TAATTAAAGA CGGATTCCAC AAAGAGAGCG AGCTGTAA
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Protein sequence | MPFYFRKECP LNSGYLNILL TLCTSLLLTN VAAHAKEVKI GMAIDDLRLE RWQKDRDIFV KKAESLGAKV FVQSANGNGE TQMSQIENMI NRGVDVLVII PYNGQVLSNV VKEAKQEGIK VLAYDRMIND ADIDFYISFD NEKVGELQAK ALVDIVPQGN YFLMGGSPVD NNAKLFRAGQ MKVLKPYVDS GKIKVVGDQW VDGWLPENAL TANNNKIDAV VASNDATAGG AIQALSAQGL SGKVAISGQD ADLAGIKRIA AGTQTMTVYK PITLLANTAA EIAVELGNGQ EPKADTSLNN GLKDVPSRLL TPIDVNKNNI KDTVIKDGFH KESEL
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