Gene SbBS512_E3956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3956 
SymbolxylF 
ID6268488 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp3691545 
End bp3692552 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content44% 
IMG OID641727805 
ProductD-xylose transporter subunit XylF 
Protein accessionYP_001882238 
Protein GI187732099 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4213] ABC-type xylose transport system, periplasmic component 
TIGRFAM ID[TIGR02634] D-xylose ABC transporter, substrate-binding protein 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCATTCT ATTTCAGGAA GGAGTGTCCG TTAAACTCAG GCTACCTCAA CATTCTACTC 
ACCCTTTGCA CCTCACTTCT GCTTACCAAC GTTGCGGCAC ACGCCAAAGA AGTCAAAATA
GGTATGGCGA TTGATGATCT ACGTCTTGAA CGCTGGCAAA AAGATCGAGA TATTTTTGTG
AAAAAGGCTG AATCTCTCGG TGCGAAAGTA TTTGTACAGT CTGCAAATGG CAATGGAGAA
ACACAAATGT CGCAGATTGA AAACATGATT AACCGGGGTG TCGATGTTCT TGTCATTATT
CCGTATAACG GCCAGGTATT AAGTAACGTT GTAAAAGAAG CCAAACAAGA AGGTATTAAA
GTATTAGCTT ACGACCGTAT GATTAACGAT GCGGATATCG ATTTTTATAT TTCTTTCGAT
AACGAAAAAG TCGGTGAACT GCAGGCAAAA GCCCTGGTCG ATATTGTTCC GCAAGGTAAT
TACTTCCTGA TGGGCGGCTC GCCGGTAGAT AACAACGCCA AGCTGTTCCG CGCCGGACAA
ATGAAAGTGT TAAAACCTTA CGTTGATTCC GGAAAAATTA AAGTCGTTGG TGACCAATGG
GTTGATGGCT GGTTACCGGA AAACGCGCTA ACCGCCAATA ATAACAAAAT TGATGCTGTA
GTTGCCTCAA ACGATGCCAC CGCAGGTGGG GCAATTCAGG CATTAAGCGC GCAAGGTTTA
TCAGGGAAAG TAGCAATTTC CGGCCAGGAT GCGGATCTCG CAGGTATTAA ACGTATTGCT
GCCGGTACGC AAACTATGAC GGTGTATAAA CCTATTACAT TGCTGGCAAA TACTGCCGCA
GAAATTGCCG TTGAATTGGG CAATGGTCAG GAGCCAAAAG CAGATACCTC ACTGAATAAT
GGCCTGAAAG ATGTCCCCTC CCGCCTCCTG ACACCGATCG ATGTGAATAA AAACAACATC
AAAGATACGG TAATTAAAGA CGGATTCCAC AAAGAGAGCG AGCTGTAA
 
Protein sequence
MPFYFRKECP LNSGYLNILL TLCTSLLLTN VAAHAKEVKI GMAIDDLRLE RWQKDRDIFV 
KKAESLGAKV FVQSANGNGE TQMSQIENMI NRGVDVLVII PYNGQVLSNV VKEAKQEGIK
VLAYDRMIND ADIDFYISFD NEKVGELQAK ALVDIVPQGN YFLMGGSPVD NNAKLFRAGQ
MKVLKPYVDS GKIKVVGDQW VDGWLPENAL TANNNKIDAV VASNDATAGG AIQALSAQGL
SGKVAISGQD ADLAGIKRIA AGTQTMTVYK PITLLANTAA EIAVELGNGQ EPKADTSLNN
GLKDVPSRLL TPIDVNKNNI KDTVIKDGFH KESEL