Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3954 |
Symbol | xylH |
ID | 6271619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3688767 |
End bp | 3689948 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641727803 |
Product | D-xylose ABC transporter, permease protein |
Protein accession | YP_001882236 |
Protein GI | 187733005 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4214] ABC-type xylose transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGAAAA GCAATCCGTC TGAAGTGAAA TTGGCCGTAC CGACATCCGG TGGCTTTTCC GGGCTGAAAT CACTGAATTT GCAGGTCTTC GTGATGATTG CAGCTATCAT CGCAATCATG CTGTTCTTTA CCTGGACCAC CGATGGTGCC TACTTAAGCG CCCGTAACGT CTCCAACCTG TTACGCCAGA CCGCGATTAC CGGCATCCTC GCGGTAGGAA TGGTGTTCGT CATAATTTCT GCTGAAATCG ACCTTTCCGT CGGCTCAATG ATGGGGCTAT TAGGTGGCGT CGCGGCGATT TGTGACGTCT GGTTAGGCTG GCCTTTGCCA CTTACCATCA TTGTGACGTT GGTTCTGGGA CTGCTTCTCG GTGCGTGGAA CGGATGGTGG GTCGCGTACC GTAAAGTCCC TTCATTTATT GTCACCCTCG CGGGCATGTT GGCATTTCGC GGCATACTCA TTGGCATCAC CAACGGCACG ACTGTATCCC CCACCAGCGC CGCGATGTCA CAAATTGGGC AAAGCTATCT CCCCGCCAGT ACCGGCTTCA TCATTGGCGC GCTTGGCTTA ATGGCTTTTG TTGGTTGGCA ATGGCGCGGA AGAATGCGCC GTCAGGCTTT GGGTTTACAG TCTCCGGCCT CTACCGCAGT AGTCGGTCGC CAGGCTTTAA CCGCTATCAT CGTATTAGGC GCAATCTGGC TGTTGAATGA TTACCGTGGC GTTCCCACTC CTGTTCTGCT GCTGACGTTG CTGTTACTCG GCGGAATGTT TATGGCAACG CGGACGGCAT TTGGACGACG CATTTATGCC ATCGGCGGCA ATCTGGAAGC AGCACGTCTC TCCGGGATTA ACGTTGAACG CACCAAACTT GCCGTGTTCG CGATTAACGG ATTAATGGTA GCCATCGCCG GATTAATCCT TAGTTCTCGA CTTGGCGCTG GTTCACCTTC TGCGGGAAAT ATCGCCGAAC TGGACGCTAT TGCAGCATGC GTGATTGGCG GCACCAGCCT GGCTGGCGGT GTGGGAAGCG TTGCCGGAGC AGTAATGGGG GCATTTATCA TGGCTTCACT GGATAACGGC ATGAGTATGA TGGATGTACC GACCTTCTGG CAGTATATCG TTAAAGGTGC GATTCTGTTG CTGGCAGTAT GGATGGACTC CGCAACCAAA CGCCGTTCTT GA
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Protein sequence | MSKSNPSEVK LAVPTSGGFS GLKSLNLQVF VMIAAIIAIM LFFTWTTDGA YLSARNVSNL LRQTAITGIL AVGMVFVIIS AEIDLSVGSM MGLLGGVAAI CDVWLGWPLP LTIIVTLVLG LLLGAWNGWW VAYRKVPSFI VTLAGMLAFR GILIGITNGT TVSPTSAAMS QIGQSYLPAS TGFIIGALGL MAFVGWQWRG RMRRQALGLQ SPASTAVVGR QALTAIIVLG AIWLLNDYRG VPTPVLLLTL LLLGGMFMAT RTAFGRRIYA IGGNLEAARL SGINVERTKL AVFAINGLMV AIAGLILSSR LGAGSPSAGN IAELDAIAAC VIGGTSLAGG VGSVAGAVMG AFIMASLDNG MSMMDVPTFW QYIVKGAILL LAVWMDSATK RRS
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