Gene SbBS512_E3944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3944 
Symbol 
ID6273014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp3677938 
End bp3678951 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content54% 
IMG OID641727794 
Product2,3-diketo-l-gulonate trap transporter large permease protein yian 
Protein accessionYP_001882227 
Protein GI187732351 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1593] TRAP-type C4-dicarboxylate transport system, large permease component 
TIGRFAM ID[TIGR00786] TRAP transporter, DctM subunit 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGTGC TGATTTTTCT GGGCTGTCTG TTGGGTGGTA TTGCTATCGG TTTGCCTATT 
GCCTGGGCAC TGTTGTTGTG CGGGGCGGCG TTAATGTTCT GGCTGGACAT GTTTGATGTC 
CAGATCATGG CACAAACGCT GGTGAACGGA GCCGATAGCT TCTCCCTGCT GGCGATTCCG 
TTCTTTGTGC TGGCGGGTGA AATCATGAAT GCGGGCGGCT TGTCAAAACG CATTGTTGAC 
CTGCCGATGA AACTGGTGGG GCATAAACCA GGCGGGCTGG GCTACGTCGG CGTGCTGGCA 
GCTATGATTA TGGCGAGCCT TTCTGGTTCT GCCGTTGCGG ATACCGCCGC CGTTGCCGCT 
CTACTGGTGC CGATGATGCG CAGCGCCAAC TACCCGGTCA ACCGGGCGGC GGGGCTGATT 
GCCTCTGGCG GCATTATCGC GCCAATTATT CCCCCTTCCA TTCCGTTTAT TATCTTCGGC 
GTTTCCAGCG GATTATCCAT CAGTAAGCTG TTTATGGCGG GCATTGCCCC TGGCATGATG 
ATGGGCGCAA CGCTGATGCT TACCTGGTGG TGGCAGGCCA GTCGCCTTAA TTTACCCCGC 
CAGCAAAAAG CAACGATGCA GGAAATCTGG CACTCTTTTG TCTCCGGTAT CTGGGCTCTG 
TTTCTTTCAG TCATCATTAT TGGCGGGTTT CGCTCCGGTC TGTTTACCCC TACCGAAGCC 
GGGGCCGTTG CTGCTTTCTA TGCGCTGTTT GTCGCCACAG TTATTTACCG TGAAATGGCC 
TTCGCCACAC TTTGGCATGT ACTCATTGGC GCGGCGAAAA CCACCTCAGT GGTTATGTTT 
CTGGTGGCCT CGGCACAAGT TTCCGCCTGG CTGATTACCA TTGCTGAACT GCCGATGATG 
GTTTCTGATT TACTGCAACC GTTGGTCGAT TCACCGCGTC TGCTGTTTAT CGTCATTATG 
GTGGCTATCC TGATTGTCGG CATGGTCGGT AATGCTGCCA ACTTACTGAT TTAG
 
Protein sequence
MAVLIFLGCL LGGIAIGLPI AWALLLCGAA LMFWLDMFDV QIMAQTLVNG ADSFSLLAIP 
FFVLAGEIMN AGGLSKRIVD LPMKLVGHKP GGLGYVGVLA AMIMASLSGS AVADTAAVAA 
LLVPMMRSAN YPVNRAAGLI ASGGIIAPII PPSIPFIIFG VSSGLSISKL FMAGIAPGMM 
MGATLMLTWW WQASRLNLPR QQKATMQEIW HSFVSGIWAL FLSVIIIGGF RSGLFTPTEA 
GAVAAFYALF VATVIYREMA FATLWHVLIG AAKTTSVVMF LVASAQVSAW LITIAELPMM 
VSDLLQPLVD SPRLLFIVIM VAILIVGMVG NAANLLI