Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3935 |
Symbol | |
ID | 6271509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3664471 |
End bp | 3666426 |
Gene Length | 1956 bp |
Protein Length | 651 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641727786 |
Product | putative phosphodiesterase |
Protein accession | YP_001882219 |
Protein GI | 187732092 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAATGG TGGCAGCCGT TGTCCTGGTG TTCGTTTTTA TTTTTTGCAC CGTTTTGCTG TTCCATCTGG TCCAGCAGAA TCGCTATAAC ACGGCTACGC AACTGGAAAG CATTGCTCGC TCTGTACGCG AACCCTTATC TTCAGCTATT TTGAAAGGCG ATATTCCCGA AGCGGAAGCT ATTCTTGCCA GCATTAAACC GGCAGGCGTG GTCAGCCGTG CCGATGTAGT GCTGCCTAAC CAGTTCCAGG CGCTGCGTAA AAGTTTTATT CCAGAGCGCC CGGTGCCGGT AATGGTTACT CGCCTGTTTG AGCTACCGGT TCAAATCTCG CTGGGCGTTT ACTCGCTCGA ACGTCCGGCA AACCCGCAGC CAATTGCCTA TCTGGTACTA CAGGCGGATT CCTTCCGTAT GTATAAGTTC GTGATGAGCA CCCTCTCAAC GTTAGTGACC ATTTACTTAC TTTTGTCGCT TATCCTGACC GTCGCCATCA GCTGGTGCAT TAACCGCCTG ATTTTGCATC CGTTACGCAA TATTGCTCGC GAACTTAACG CCATCCCAGC CCAGGAGCTT GTTGGTCACC AACTGGCATT ACCGCGTCTG CATCAGGACG ATGAAATCGG TATGTTGGTG CGCAGTTACA ACCTCAACCA GCAATTGCTG CAGCGCCATT ATGAAGAACA GAACGAAAAT GCGATGCGCT TCCCGGTGTC GGATTTGCCG AACAAAGCCT TGCTGATGGA GATGCTGGAG CAGGTTGTCG CGCGTAAACA AACCACCGCG CTGATGATCA TCACCTGTGA AACCCTGCGT GATACTGCGG GCGTGCTGAA AGAGGCGCAA CGAGAAATTC TGCTGCTGAC GCTGGTGGAA AAACTCAAAT CGGTACTGTC GCCACGTATG ATCCTCGCGC AGATTAGCGG TTATGACTTT GCTGTCATTG CCAACGGTGT ACAGGAACCG TGGCACGCAA TCACCTTAGG TCAGCAAGTG CTCACTATCA TGAGCGAGCG CCTGCCGATT GAACGTATTC AACTCCGTCC GCACTGTAGC ATTGGCGTGG CGATGTTCTA CGGCGATCTC ACCGCCGAAC AGCTTTACAG TCGCGCTATT TCTGCGGCAT TTACCGCTCG CCATAAAGGC AAGAATCAGA TTCAGTTCTT TGATCCGCAG CAGATGGAAG CCGCCCAGAA GCGGTTGACG GAAGAGAGCG ATATCCTTAA TGCACTGGAA AATCATCAGT TTGCTATTTG GTTACAGCCA CAGGTCGAGA TGACCAGCGG TAAACTGGTC AGTGCGGAAG TGTTACTGCG TATCCAGCAA CCGGATGGCA GTTGGGACCT GCCGGATGGC TTAATCGATC GCATTGAGTG CTGTGGGCTG ATGGTTACCG TCGGTCACTG GGTGCTGGAA GAGTCCTGTC GATTGCTTGC AGCCTGGCAA GAGCGCGGCA TTATGCTGCC CTTGTCGGTA AACCTCTCTG CGCTGCAACT GATGCACCCA AATATGGTGG CGGATATGCT GGAACTGTTA ACCCGCTATC GCATTCAGCC GGGAACACTG ATTCTGGAAG TGACAGAAAG CCGACGTATT GACGACCCTC ATGCTGCGGT GGCAATCCTC CGTCCGCTGC GCAATGCCGG AGTTCGGGTG GCGCTGGATG ATTTCGGCAT GGGCTACGCA GGGCTGCGTC AGCTGCAGCA TATGAAATCG TTGCCAATCG ACGTACTGAA AATCGACAAA ATGTTTGTTG AAGGCTTGCC GGAAGATAGC AGCATGATTG CTGCAATTAT CATGCTGGCG CAGAGCCTGA ACTTACAAAT GATTGCCGAA GGCGTGGAGA CTGAAGCACA ACGCGACTGG CTGGCAAAAG CGGGCGTTGG TATTGCCCAG GGCTTCCTTT TTGCTCGCCC ACTCCCTATT GAAATCTTCG AAGAGAGTTA CCTGGAAGAA AAGTAG
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Protein sequence | MAMVAAVVLV FVFIFCTVLL FHLVQQNRYN TATQLESIAR SVREPLSSAI LKGDIPEAEA ILASIKPAGV VSRADVVLPN QFQALRKSFI PERPVPVMVT RLFELPVQIS LGVYSLERPA NPQPIAYLVL QADSFRMYKF VMSTLSTLVT IYLLLSLILT VAISWCINRL ILHPLRNIAR ELNAIPAQEL VGHQLALPRL HQDDEIGMLV RSYNLNQQLL QRHYEEQNEN AMRFPVSDLP NKALLMEMLE QVVARKQTTA LMIITCETLR DTAGVLKEAQ REILLLTLVE KLKSVLSPRM ILAQISGYDF AVIANGVQEP WHAITLGQQV LTIMSERLPI ERIQLRPHCS IGVAMFYGDL TAEQLYSRAI SAAFTARHKG KNQIQFFDPQ QMEAAQKRLT EESDILNALE NHQFAIWLQP QVEMTSGKLV SAEVLLRIQQ PDGSWDLPDG LIDRIECCGL MVTVGHWVLE ESCRLLAAWQ ERGIMLPLSV NLSALQLMHP NMVADMLELL TRYRIQPGTL ILEVTESRRI DDPHAAVAIL RPLRNAGVRV ALDDFGMGYA GLRQLQHMKS LPIDVLKIDK MFVEGLPEDS SMIAAIIMLA QSLNLQMIAE GVETEAQRDW LAKAGVGIAQ GFLFARPLPI EIFEESYLEE K
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