| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3929 |
|---|
| Symbol | |
|---|
| ID | 6268969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 3657131 |
|---|
| End bp | 3659191 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641727780 |
|---|
| Product | AsmA family protein |
|---|
| Protein accession | YP_001882213 |
|---|
| Protein GI | 187731640 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG CAGGCAAAAT AACCGCTGCG ATTTCAGGGG CTTTCTTGTT GTTGATTGTC
GTGGCGATCA TTTTGATTGC AACTTTTGAC TGGAATCGAC TCAAACCGAC CATCAACCAG
AAAGTCTCTG CGGAGTTGAA TCGTCCGTTC GCTATCCGTG GCGATCTGGG CGTGGTGTGG
GAGCGGCAAA AACAAGAAAC TGGCTGGCGC AGCTGGGTGC CGTGGCCTCA TGTACATGCA
GAAGACATCA TTCTTGGCAA TCCACCGGAT ATTCCCGAAG TCACGATGGT GCATTTGCCG
CGAGTAGAGG CAACGCTGGC ACCGCTGGCG CTGCTGACCA AAACGGTCTG GCTGCCGTGG
ATCAAGCTCG AAAAGCCCGA CGCGCGCCTG ATTCGCCTCT CCGAAAAGAA CAATAACTGG
ACGTTTAATC TCGCCAACGA TGATAACAAA GACGCGAATG CAAAGCCGTC GGCATGGTCG
TTTCGGCTGG ATAATATTCT TTTCGATCAA GGGCGGATCG CCATTGATGA CAAAGTAAGC
AAAGCGGATC TGGAAATTTT TGTTGATCCG TTAGGCAAGC CGCTGCCGTT CAGCGAAGTT
ACTGGATCGA AAGGTAAAGC GGATAAAGAA AAGGTGGGCG ATTACGTTTT TGGCCTGAAG
GCGCAGGGAC GTTATAACGG TGAACCGCTC ACGGGTACGG GAAAAATAGG CGGTATGCTG
GCGCTGCGTG GCGAAGGGAC GCCGTTTCCG GTACAGGCTG ATTTCCGTTC AGGTAATACC
CGTGTTGCTT TTGATGGCGT CGTGAATGAC CCAATGAAGA TGGGCGGTGT CGATTTACGG
CTTAAATTTT CTGGCGATTC ACTGGGTGAT CTCTATGAAC TGACGGGCGT TCTGCTGCCC
GATACCCCGC CGTTTGAAAC GGATGGTCGG CTGGTAGCGA AAATCGACAC TGAAAAATCG
TCGGTCTTTG ATTATCGCGG TTTTAATGGA CGAATTGGCG ATAGCGATAT CCACGGTTCT
CTGGTCTACA CCACCGGAAA GCCACGACCA AAACTGGAAG GTGATGTCGA GTCGCGGCAA
TTGCGGCTGG CGGACCTGGG ACCGTTGATT GGCGTTGATT CGGGGAAAGG GGCAGAAAAG
TCGAAACGGT CTGAACAGAA GAAGGGCGAA AAAAGCGTTC AGCCTGCGGG CAAAGTGCTG
CCTTATGACC GCTTCGAAAC CGATAAATGG GACGTTATGG ATGCCGATGT TCGCTTCAAA
GGCCGACGTA TCGAGCATGG CAGTAGCCTG CCGATTAGCG ATCTTTCTAC TCATATCATC
CTCAAAAATG CTGACCTGCG CCTGCAACCG CTGAAATTTG GCATGGCGGG CGGCAGCATT
GCGGCGAATA TCCATCTGGA AGGCGATAAA AAGCCGATGC AGGGGCGGGC AGATATTCAG
GCTCGTCGAC TGAAACTGAA AGAACTGATG CCCGATGTGG AACTGATGCA GAAGACGCTG
GGGGAAATGA ACGGTGACGC GGAACTACGC GGTAGCGGTA ACTCGGTGGC GGCGCTTTTA
GGCAACAGTA ACGGCAACCT GAAACTGTTG ATGAATGACG GGCTGGTGAG CCGCAACCTG
ATGGAGATTG TTGGGCTGAA TGTCGGCAAC TACATTGTCG GTGCGATATT TGGTGACGAT
GAGGTGCGGG TGAACTGCGC GGCGGCGAAT CTGAATATTG CCAACGGCGT AGCGCGCCCG
CAGATTTTTG CTTTCGATAC TGAGAACGCG TTGATTAATG TTACCGGCAC GGCAAGTTTT
GCTTCGGAAC AGCTGGATTT GACTATTGAT CCGGAGAGTA AAGGGATTCG GATTATCACA
CTGCGTTCGC CGCTGTATGT GCGTGGGACG TTTAAAAATC CGCAGGCTGG GGTGAAAGCC
GGACCGCTGA TTGCCCGTGG TGCCGTTGCG GCGGCACTGG CAACGCTGGT AACACCGGCG
GCGGCGTTAT TGGCACTGAT CTCACCTTCC GAAGGGGAGG CTAATCAGTG TCGGACGATA
TTGTCGCAGA TGAAGAAGTG A
|
|---|
| Protein sequence | MSKAGKITAA ISGAFLLLIV VAIILIATFD WNRLKPTINQ KVSAELNRPF AIRGDLGVVW
ERQKQETGWR SWVPWPHVHA EDIILGNPPD IPEVTMVHLP RVEATLAPLA LLTKTVWLPW
IKLEKPDARL IRLSEKNNNW TFNLANDDNK DANAKPSAWS FRLDNILFDQ GRIAIDDKVS
KADLEIFVDP LGKPLPFSEV TGSKGKADKE KVGDYVFGLK AQGRYNGEPL TGTGKIGGML
ALRGEGTPFP VQADFRSGNT RVAFDGVVND PMKMGGVDLR LKFSGDSLGD LYELTGVLLP
DTPPFETDGR LVAKIDTEKS SVFDYRGFNG RIGDSDIHGS LVYTTGKPRP KLEGDVESRQ
LRLADLGPLI GVDSGKGAEK SKRSEQKKGE KSVQPAGKVL PYDRFETDKW DVMDADVRFK
GRRIEHGSSL PISDLSTHII LKNADLRLQP LKFGMAGGSI AANIHLEGDK KPMQGRADIQ
ARRLKLKELM PDVELMQKTL GEMNGDAELR GSGNSVAALL GNSNGNLKLL MNDGLVSRNL
MEIVGLNVGN YIVGAIFGDD EVRVNCAAAN LNIANGVARP QIFAFDTENA LINVTGTASF
ASEQLDLTID PESKGIRIIT LRSPLYVRGT FKNPQAGVKA GPLIARGAVA AALATLVTPA
AALLALISPS EGEANQCRTI LSQMKK
|
|---|
| |