Gene SbBS512_E3911 details

Gene Information

• Locus tag: SbBS512_E3911
• Symbol: mdtE
• ID: 6272961
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 3637035
• End bp: 3638192
• Gene Length: 1158 bp
• Protein Length: 385 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641727765
• Product: multidrug efflux system protein MdtE
• Protein accession: YP_001882199
• Protein GI: 187732321
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0845] Membrane-fusion protein
• TIGRFAM ID: [TIGR01730] RND family efflux transporter, MFP subunit

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAGAA GAAGAAAGCT GTTAATACCG TTGTTATTCT GCGGCGCGAT GCTCACCGCC 
TGCGATGACA AATCGGCGGA AAACGCCGCC GCCATGACGT CTGAGGTCGG TGTCGTCACA 
CTCTCCCCCG GTTCGGTCAA TGTGTTGAGC GAATTGCCCG GTAGAACCGT TCCTTATGAA 
GTTGCCGAGA TACGTCCCCA GGTGGGCGGT ATTATCATTA AACGCAACTT TATCGAAGGC 
GATAAAGTGA ACCAGGGCGA TTCGCTGTAT CAGATTGATC CTGCACCTTT ACAGGCCGAG 
CTAAACTCCG CCAAAGGCTC GCTGGCGAAA GCGCTCTCTA CCGCCAGCAA TGCCCGCATC 
ACCTTTAACC GCCAGGCATC GTTGCTGAAG ACCAACTACG TTAGCCGTCA GGATTACGAC 
ACCGCGCGCA CCCAGCTGAA TGAAGCAGAA GCCAATGTCA CCGTCGCCAA AGCGGCTGTT 
GAACAGGCGA CGATCAATCT GCAATACGCG AATGTCACCT CGCCGATTAC GGGCGTCAGC 
GGGAAATCGT CGGTGACCGT CGGCGCACTC GTTACCGCTA ATCAGGCAGA TTCGCTGGTT 
ACCGTACAAC GTCTGGACCC GATTTATGTC GATCTCACGC AGTCGGTGCA GGATTTCTTG 
CGCATGAAAG AAGAGGTCGC CAGTGGGCAA ATCAAACAGG TTCAGGGCAG TACGCCAGTA 
CAGCTCAATC TGGAAAATGG TAAACGCTAC AGCCAGACCG GCACACTGAA ATTCTCCGAC 
CCGACGGTGG ATGAAACCAC GGGCTCCGTG ACGTTACGGG CGATTTTCCC CAACCCAAAT 
GGTGACTTGC TGCCTGGCAT GTACGTCACG GCATTAGTGG ATGAAGGTAG CCGCCAGAAT 
GTATTACTGG TGCCGCAGGA AGGCGTCACC CACAACGCCC AGGGTAAAGC AACGGCGCTC 
ATTCTGGATA AAGACGATGT TGTGCAGCTA CGCGAAATTG AAGCCAGCAA AGCCATCGGC 
GACGAGTGGG TTGTCACCTC TGGCTTGCAG GCTGGCGATC GGGTGATCGT TTCCGGTTTG 
CAACGCATTC GTCCGGGTAT CAAAGCACGA GCAATTTCCT CCAGCCAGGA AAACGCCAGC 
ACCGAATCGA AACAATAA 

 

Protein sequence

MNRRRKLLIP LLFCGAMLTA CDDKSAENAA AMTSEVGVVT LSPGSVNVLS ELPGRTVPYE 
VAEIRPQVGG IIIKRNFIEG DKVNQGDSLY QIDPAPLQAE LNSAKGSLAK ALSTASNARI 
TFNRQASLLK TNYVSRQDYD TARTQLNEAE ANVTVAKAAV EQATINLQYA NVTSPITGVS 
GKSSVTVGAL VTANQADSLV TVQRLDPIYV DLTQSVQDFL RMKEEVASGQ IKQVQGSTPV 
QLNLENGKRY SQTGTLKFSD PTVDETTGSV TLRAIFPNPN GDLLPGMYVT ALVDEGSRQN 
VLLVPQEGVT HNAQGKATAL ILDKDDVVQL REIEASKAIG DEWVVTSGLQ AGDRVIVSGL 
QRIRPGIKAR AISSSQENAS TESKQ