| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3801 |
|---|
| Symbol | rtcB |
|---|
| ID | 6269994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 3531881 |
|---|
| End bp | 3533107 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641727663 |
|---|
| Product | RtcB protein |
|---|
| Protein accession | YP_001882098 |
|---|
| Protein GI | 187732471 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1690] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.586783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTACG AATTACTGAC CACTGAAAAT GCCCCGGTAA AAATGTGGAC CAAAGGCGTG
CCGGTAGAAG CCGATGCGCG TCAGCAACTT ATTAATACGG CGAAGATGCC GTTTATTTTC
AAACATATTG CGGTAATGCC TGATGTACAC CTGGGTAAAG ATTCCACCAT TGGTAGCGTG
ATCCCGACCA AAGGGGCGAT TATTCCGGCG GCGGTGGGCG TGGATATTGG CTGTGGAATG
AACGCGCTGC GTACCGCGTT AACGGCGGAA GACCTGCCTG AAAACCTGGC AGAGCTGCGT
CAGGCGATTG AAACGGCCGT GCCGCACGGG CGTACTACCG GGCGTTGTAA ACGTGATAAA
GGCGCATGGG AAAACCCGCC TGTTAACGTC GATGCGAAAT GGGCTGAGCT TGAAGCCGGT
TATCAGTGGT TAACGCAAAA ATATCCCCGT TTCCTGAATA CCAATAACTA TAAACACCTG
GGAACGCTGG GAACCGGTAA CCACTTTATT AAAATCTGCC TTGATGAGTC GGACCAGGTG
TGGATTATGC TGCACTCCGG TTCACGCGGA ATTGGTAACG CCATCGGGAC TTACTTTATC
GATCTGGCAC AAAAAGAGAT GCAGGAAACG CTTGAGACGT TGCCGTCGCG TGATCTGGCG
TACTTTATGG AAGGTACGGA ATACTTTGAT GATTACCTGA AAGCCGTGGC CTGGGCGCAG
CTTTTTGCCA GCCTTAACCG CGATGCGATG ATGGAAAACG TGGTAACGGC ATTGCAGAGC
ATTACGCAGA AAACGGTCAG ACAGCCACAA ACGCTGGCGA TGGAAGAGAT CAACTGTCAC
CACAACTATG TGCAAAAAGA ACAGCACTTT GGTGAAGAGA TCTACGTGAC GCGTAAAGGC
GCGGTGTCTG CGCGTGCTGG TCAATATGGA ATTATTCCCG GTTCGATGGG AGCAAAAAGC
TTTATCGTCC GTGGGCTGGG AAATGAAGAG TCGTTCTGTT CGTGCAGCCA CGGTGCCGGG
CGGGTAATGA GCCGAACTAA AGCGAAAAAA CTGTTCAGCG TGGAAGATCA AATTCGTGCC
ACCGCGCATG TGGAATGCCG TAAAGATGCC GAAGTGATCG ACGAAATCCC GATGGCGTAT
AAAGATATTG ATGCGGTGAT GACGGCACAA AGCGATCTGG TGGAAGTTAT CTATACCCTG
CGTCAGGTGG TGTGCGTAAA AGGATAA
|
|---|
| Protein sequence | MNYELLTTEN APVKMWTKGV PVEADARQQL INTAKMPFIF KHIAVMPDVH LGKDSTIGSV
IPTKGAIIPA AVGVDIGCGM NALRTALTAE DLPENLAELR QAIETAVPHG RTTGRCKRDK
GAWENPPVNV DAKWAELEAG YQWLTQKYPR FLNTNNYKHL GTLGTGNHFI KICLDESDQV
WIMLHSGSRG IGNAIGTYFI DLAQKEMQET LETLPSRDLA YFMEGTEYFD DYLKAVAWAQ
LFASLNRDAM MENVVTALQS ITQKTVRQPQ TLAMEEINCH HNYVQKEQHF GEEIYVTRKG
AVSARAGQYG IIPGSMGAKS FIVRGLGNEE SFCSCSHGAG RVMSRTKAKK LFSVEDQIRA
TAHVECRKDA EVIDEIPMAY KDIDAVMTAQ SDLVEVIYTL RQVVCVKG
|
|---|
| |