Gene SbBS512_E3800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3800 
SymbolrtcA 
ID6273070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp3530861 
End bp3531877 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content60% 
IMG OID641727662 
ProductRNA 3'-terminal-phosphate cyclase 
Protein accessionYP_001882097 
Protein GI187734207 
COG category[A] RNA processing and modification 
COG ID[COG0430] RNA 3'-terminal phosphate cyclase 
TIGRFAM ID[TIGR03399] RNA 3'-phosphate cyclase 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGGA TGATTGCGCT GGATGGCGCA CAGGGCGAAG GTGGCGGGCA GATTCTGCGC 
GCGGCGCTGA GCCTGTCGAT GATAACCGGC CAGCCATTTA CCATCACCAG CATTCGTGCC 
GGGCGGGCGA AACCGGGGCT GTTGCGCCAG CATCTGACCG CGGTAAAAGC GGCTGCGGAA 
ATTTGTAGGG CAACGGTGGA AGGCGCGGAG CTGGGGTCGC AGCGTCTGGT CTTCCGGCCT 
GGCGCCGTGC GCGGCGGCGA GTACCGCTTT GCTATCGGTA GTGCCGGAAG CTGTACGCTG 
GTGCTGCAAA CGGTGCTGCC CGCGCTGTGG TTTGCCGATG GACCTTCGCG TGTTGAAGTG 
AGCGGAGGCA CCGATAACCC GTCGGCGCCG CCTGCGGATT TTATCCGCCG GGTGCTGGAG 
CCGCTGCTGG CGAAAATAGG AATTCATCAG CAAACCACGC TGTTACGTCA CGGTTTTTAT 
CCTGCCGGAG GCGGCGTGGT GGCAACGGAA GTCTCGCCCG TGGCATCGTT TAACACCTTG 
CAACTTGGCG AGCGCGGGAA CATTGTGCAG ATGCGTGGAG AAGTTCTATT AGCTGGTGTG 
CCGCGCCATG TTGCTGAGCG TGAAATCGCT ACACTGGCGG GGAGTTTTTC CCTGCATGAA 
CAGAATATTC ATAACCTGCC GCGCGACCAG GGGCCGGGTA ATACCGTCTC GCTGGAAGTC 
GAAAGTGAAA ATATCACTGA ACGCTTTTTC GTCGTCGGTG AAAAGCGCGT CAGTGCCGAG 
GTGGTAGCCG CGCAGTTAGT GAAAGAGGTG AAACGCTACC TGGCAAGCCC GGCGGCAGTG 
GGGGAATATC TCGCCGACCA GCTGGTGCTA CCGATGGCGC TGGCGGGCGC GGGAGAATTT 
ACGGTCGCCC ATCCTTCATG CCATCTGCTG ACCAATATCG CCGTGGTGGA GCGTTTCTTG 
CCGGTGCGGT TTGGTTTGAT AGAAACAGAT GGCGTAACGC GGGTGAGTAT TGAATGA
 
Protein sequence
MKRMIALDGA QGEGGGQILR AALSLSMITG QPFTITSIRA GRAKPGLLRQ HLTAVKAAAE 
ICRATVEGAE LGSQRLVFRP GAVRGGEYRF AIGSAGSCTL VLQTVLPALW FADGPSRVEV 
SGGTDNPSAP PADFIRRVLE PLLAKIGIHQ QTTLLRHGFY PAGGGVVATE VSPVASFNTL 
QLGERGNIVQ MRGEVLLAGV PRHVAEREIA TLAGSFSLHE QNIHNLPRDQ GPGNTVSLEV 
ESENITERFF VVGEKRVSAE VVAAQLVKEV KRYLASPAAV GEYLADQLVL PMALAGAGEF 
TVAHPSCHLL TNIAVVERFL PVRFGLIETD GVTRVSIE