Gene SbBS512_E3609 details

Gene Information

• Locus tag: SbBS512_E3609
• Symbol: deaD
• ID: 6271868
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 3361435
• End bp: 3363390
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641727479
• Product: ATP-dependent RNA helicase DeaD
• Protein accession: YP_001881921
• Protein GI: 187731310
• COG category: [J] Translation, ribosomal structure and biogenesis; [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG0513] Superfamily II DNA and RNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 40
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCTGATCA ATTTCATGAT GAGTTATGTA GACTGGCCGC CATTAATTTT GAGGCACACG 
TACTACATGG CTGAATTCGA AACCACTTTT GCAGATCTGG GCCTGAAGGC TCCTATCCTT 
GAAGCCCTTA ACGATCTGGG TTACGAAAAA CCATCTCCAA TTCAGGCAGA GTGTATTCCA 
CATCTGCTGA ATGGCCGCGA CGTTCTGGGT ATGGCCCAGA CGGGGAGCGG AAAAACTGCA 
GCATTCTCTT TACCTCTGTT GCAGAATCTT GATCCTGAGC TGAAAGCACC ACAGATTCTG 
GTGCTGGCAC CGACCCGCGA ACTGGCGGTA CAGGTTGCTG AAGCAATGAC GGATTTCTCT 
AAACACATGC GCGGCGTAAA TGTGGTTGCT CTGTACGGCG GCCAGCGTTA TGACGTGCAA 
TTACGCGCCC TGCGTCAGGG GCCGCAGATC GTTGTCGGTA CTCCGGGCCG TCTGCTGGAC 
CACCTGAAAC GTGGCACTCT GGACCTCTCT AAACTGAGCG GTCTGGTTCT GGATGAAGCT 
GACGAAATGC TGCGCATGGG CTTCATCGAA GACGTTGAAA CCATTATGGC GCAGATCCCG 
GAAGGTCATC AGACCGCTCT GTTCTCTGCA ACCATGCCGG AAGCGATTCG TCGCATTACC 
CGCCGCTTTA TGAAAGAGCC GCAGGAAGTG CGCATTCAGT CCAGCGTGAC TACCCGTCCT 
GACATCAGCC AGAGCTACTG GACTGTCTGG GGTATGCGCA AAAACGAAGC ACTGGTACGT 
TTCCTGGAAG CGGAAGATTT TGATGCGGCG ATTATCTTCG TTCGTACCAA AAACGCGACT 
CTGGAAGTGG CTGAAGCTCT TGAGCGTAAC GGCTACAACA GCGCCGCGCT GAACGGTGAC 
ATGAACCAGG CGCTGCGTGA ACAGACACTG GAACGCCTGA AAGATGGTCG TCTGGACATC 
CTGATTGCGA CCGACGTTGC AGCCCGTGGC CTGGACGTTG AGCGTATCAG CCTGGTAGTT 
AACTACGATA TCCCGATGGA TTCTGAGTCT TACGTTCACC GTATCGGTCG TACCGGTCGT 
GCGGGTCGTG CTGGCCGCGC GCTGCTGTTC GTTGAGAACC GCGAGCGTCG TCTGCTGCGC 
AACATTGAAC GTACTATGAA GCTGACTATT CCGGAAGTAG AACTGCCGAA CGCAGAACTG 
CTGGGCAAAC GCCGTCTGGA AAAATTCGCC GCTAAAGTAC AGCAGCAGCT GGAAAGCAGC 
GATCTGGATC AATACCGCGC ACTGCTGAGC AAAATTCAGC CGACTGCAGA AGGTGAAGAG 
CTGGATCTCG AAACTCTGGC TGCGGCACTG CTGAAAATGG CACAGGGTGA ACGTACTCTG 
ATCGTACCGC CAGATGCGCC GATGCGTCCG AAACGTGAAT TCCGTGACCG TGATGACCGT 
GGTCCGCGCG ATCGTAACGA CCGTGGCCCG CGTGGTGACC GTGAAGATCG TCCGCGTCGT 
GAACGTCGTG ATGTTGGCGA TATGCAGCTG TACCGCATTG AAGTGGGCCG TGATGATGGT 
GTTGAAGTTC GTCATATCGT TGGTGCGATT GCTAACGAAG GCGACATCAG CAGCCGTTAC 
ATTGGTAACA TCAAGCTGTT TGCTTCTCAC TCCACCATCG AACTGCCGAA AGGTATGCCG 
GGTGAAGTGC TGCAACACTT TACGCGCACT CGCATTCTCA ACAAGCCGAT GAACATGCAG 
TTACTGGGCG ATGCACAGCC GCATACTGGC GGTGAGCGTC GTGGCGGTGG TCGTGGTTTC 
GGTGGCGAAC GTCGTGAAGG CGGTCGTAAC TTCAGCGGTG AACGCCGTGA AGGTGGCCGT 
GGTGATGGTC GTCGTTTTAG CGGCGAACGT CGTGAAGGCC GCGCTCCGCG TCGTGATGAC 
TCTACCGGTC GTCGTCGTTT CGGTGGTGAT GCGTAA 

 

Protein sequence

MLINFMMSYV DWPPLILRHT YYMAEFETTF ADLGLKAPIL EALNDLGYEK PSPIQAECIP 
HLLNGRDVLG MAQTGSGKTA AFSLPLLQNL DPELKAPQIL VLAPTRELAV QVAEAMTDFS 
KHMRGVNVVA LYGGQRYDVQ LRALRQGPQI VVGTPGRLLD HLKRGTLDLS KLSGLVLDEA 
DEMLRMGFIE DVETIMAQIP EGHQTALFSA TMPEAIRRIT RRFMKEPQEV RIQSSVTTRP 
DISQSYWTVW GMRKNEALVR FLEAEDFDAA IIFVRTKNAT LEVAEALERN GYNSAALNGD 
MNQALREQTL ERLKDGRLDI LIATDVAARG LDVERISLVV NYDIPMDSES YVHRIGRTGR 
AGRAGRALLF VENRERRLLR NIERTMKLTI PEVELPNAEL LGKRRLEKFA AKVQQQLESS 
DLDQYRALLS KIQPTAEGEE LDLETLAAAL LKMAQGERTL IVPPDAPMRP KREFRDRDDR 
GPRDRNDRGP RGDREDRPRR ERRDVGDMQL YRIEVGRDDG VEVRHIVGAI ANEGDISSRY 
IGNIKLFASH STIELPKGMP GEVLQHFTRT RILNKPMNMQ LLGDAQPHTG GERRGGGRGF 
GGERREGGRN FSGERREGGR GDGRRFSGER REGRAPRRDD STGRRRFGGD A