Gene SbBS512_E3607 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3607 
Symbolpnp 
ID6270115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp3358193 
End bp3360328 
Gene Length2136 bp 
Protein Length711 aa 
Translation table11 
GC content54% 
IMG OID641727477 
Productpolynucleotide phosphorylase/polyadenylase 
Protein accessionYP_001881919 
Protein GI187732493 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 
TIGRFAM ID[TIGR03591] polyribonucleotide nucleotidyltransferase 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCTTAATC CGATCGTTCG TAAATTCCAG TACGGCCAAC ACACCGTGAC TCTGGAAACC 
GGCATGATGG CTCGTCAGGC TACTGCCGCT GTTATGGTTA GCATGGATGA CACCGCGGTA
TTTGTTACCG TTGTTGGCCA GAAAAAAGCC AAACCAGGTC AGGACTTCTT CCCACTGACC
GTTAACTATC AGGAGCGTAC CTACGCTGCT GGTCGTATCC CGGGTAGCTT CTTCCGTCGT
GAAGGTCGTC CAAGCGAAGG CGAAACCCTG ATCGCGCGTC TGATTGACCG CCCGATTCGC
CCGCTGTTCC CGGAAGGCTT CGTCAACGAA GTTCAGGTTA TCGCCACCGT GGTTTCTGTT
AACCCGCAAG TTAACCCGGA TATCGTCGCG ATGATTGGTG CTTCCGCAGC ACTGTCTCTG
TCTGGTATTC CGTTCAATGG TCCGATTGGT GCTGCTCGCG TAGGTTACAT CAATGACCAG
TACGTACTGA ACCCGACTCA GGACGAGCTG AAAGAGAGCA AACTGGATCT GGTTGTTGCC
GGTACTGAAG CCGCTGTTCT GATGGTTGAA TCTGAAGCTG AACTGCTGAG CGAAGACCAG
ATGCTGGGCG CAGTAGTGTT CGGTCATGAA CAACAGCAGG TTGTTATTCA GAACATCAAT
GAACTGGTGA AAGAAGCCGG TAAACCACGT TGGGACTGGC AGCCGGAGCC GGTAAACGAA
GCGCTGAACG CGCGCGTTGC TGCACTGGCT GAAGCTCGCC TGAGCGATGC TTACCGCATC
ACCGACAAAC AAGAGCGTTA TGCGCAGGTT GATGTCATCA AATCTGAAAC CATCGCGACG
CTGCTTGCTG AAGACGAAAC CCTGGACGAA AACGAACTGG GTGAAATTCT GCACGCTATC
GAGAAAAACG TTGTTCGTAG CCGCGTACTG GCAGGCGAAC CGCGTATCGA CGGTCGTGAA
AAAGATATGA TCCGTGGTCT GGATGTGCGT ACTGGCGTGC TGCCGCGTAC TCACGGTTCT
GCGCTGTTCA CCCGTGGTGA AACGCAGGCG CTGGTTACCG CAACGCTGGG TACTGCTCGT
GACGCGCAGG TTCTTGATGA ACTGATGGGC GAACGTACCG ATACCTTCCT GTTCCACTAC
AACTTCCCTC CGTACTCCGT AGGCGAAACC GGCATGGTCG GTTCTCCGAA GCGTCGTGAA
ATTGGTCACG GTCGTCTGGC GAAGCGCGGC GTGCTGGCAG TCATGCCGGA TATGGACAAA
TTCCCGTACA CCGTACGTGT TGTGTCTGAA ATCACTGAAT CCAACGGTTC CTCTTCTATG
GCTTCCGTGT GCGGCGCGTC TCTGGCGCTG ATGGACGCAG GTGTGCCGAT CAAAGCTGCC
GTTGCGGGTA TCGCAATGGG TCTGGTGAAA GAAGGCGACA ACTACGTTGT ACTGTCTGAC
ATTTTGGGCG ACGAAGATCA CCTGGGCGAT ATGGACTTCA AAGTTGCGGG TTCCCGCGAG
GGTATCTCTG CATTGCAGAT GGATATCAAA ATTGAAGGTA TCACCAAAGA GATCATGCAG
GTTGCGCTGA ACCAGGCTAA AGGTGCGCGT CTGCATATCC TGGGCGTAAT GGAACAGGCG
ATCAACGCGC CGCGTGGCGA TATCTCTGAG TTCGCACCGC GTATCCATAC CATCAAGATC
AACCCGGACA AGATCAAAGA CGTTATCGGT AAAGGCGGCT CTGTTATCCG TGCCCTGACC
GACGAAACTG GCACTACCAT CGAAATCGAA GATGACGGTA CTGTGAAGAT CGCAGCGACC
GACGGCGAGA AAGCGAAACA TGCTATTCGT CGTATCGAAG AGATCACTGC AGAAATCGAA
GTGGGCCGCG TCTACACTGG TAAAGTGACC CGTATCGTTG ACTTTGGCGC ATTTGTTGCC
ATCGGCGGCG GTAAAGAAGG TCTGGTCCAC ATCTCTCAAA TCGCTGACAA ACGCGTTGAG
AAAGTGACCG ATTACCTGCA GATGGGTCAG GAAGTACCGG TGAAAGTTCT GGAAGTTGAT
CGCCAGGGCC GTATCCGTCT GAGCATTAAA GAAGCGACTG AGCAGTCTCA ACCTGCTGCA
GCACCGGAAG CTCCGGCTGC TGAACAGGGC GAGTAA
 
Protein sequence
MLNPIVRKFQ YGQHTVTLET GMMARQATAA VMVSMDDTAV FVTVVGQKKA KPGQDFFPLT 
VNYQERTYAA GRIPGSFFRR EGRPSEGETL IARLIDRPIR PLFPEGFVNE VQVIATVVSV
NPQVNPDIVA MIGASAALSL SGIPFNGPIG AARVGYINDQ YVLNPTQDEL KESKLDLVVA
GTEAAVLMVE SEAELLSEDQ MLGAVVFGHE QQQVVIQNIN ELVKEAGKPR WDWQPEPVNE
ALNARVAALA EARLSDAYRI TDKQERYAQV DVIKSETIAT LLAEDETLDE NELGEILHAI
EKNVVRSRVL AGEPRIDGRE KDMIRGLDVR TGVLPRTHGS ALFTRGETQA LVTATLGTAR
DAQVLDELMG ERTDTFLFHY NFPPYSVGET GMVGSPKRRE IGHGRLAKRG VLAVMPDMDK
FPYTVRVVSE ITESNGSSSM ASVCGASLAL MDAGVPIKAA VAGIAMGLVK EGDNYVVLSD
ILGDEDHLGD MDFKVAGSRE GISALQMDIK IEGITKEIMQ VALNQAKGAR LHILGVMEQA
INAPRGDISE FAPRIHTIKI NPDKIKDVIG KGGSVIRALT DETGTTIEIE DDGTVKIAAT
DGEKAKHAIR RIEEITAEIE VGRVYTGKVT RIVDFGAFVA IGGGKEGLVH ISQIADKRVE
KVTDYLQMGQ EVPVKVLEVD RQGRIRLSIK EATEQSQPAA APEAPAAEQG E