Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3605 |
Symbol | truB |
ID | 6271059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 3356584 |
End bp | 3357528 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641727474 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_001881917 |
Protein GI | 187730450 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCGTC CTCGTCGTCG CGGTCGCGAC ATTAACGGCG TTTTGTTGCT GGATAAACCG CAGGGTATGT CCAGCAATGA TGCGCTGCAA AAAGTGAAAC GGATTTATAA CGCCAACCGT GCCGGGCATA CCGGTGCTCT GGACCCGCTG GCAACTGGCA TGTTGCCAAT TTGCTTCGGG GAAGCGACGA AGTTTTCCCA GTATCTGCTG GACTCCGACA AACGCTATCG GGTCATTGCG CGTCTTGGAC AGCGTACCGA TACTTCTGAT GCCGACGGAC AAATCGTTGA AGAACGTCCG GTAACCTTTA GCGCAGAGCA ACTGGCGGCG GCGCTGGATA CTTTCCGTGG CGATATCGAA CAGATCCCTT CGATGTATTC AGCACTGAAA TATCAGGGTA AAAAACTGTA CGAATATGCG CGTCAGGGCA TTGAAGTACC GCGTGAAGCG CGCCCGATTA CCGTTTATGA ATTGCTGTTT ATTCGCCACG AAGGCAATGA GCTGGAGCTG GAAATTCACT GCTCAAAAGG CACTTATATC CGCACCATCA TTGATGACCT GGGTGAAAAA CTCGGTTGTG GCGCGCATGT TATTTACCTG CGTCGTCTGG CGGTAAGTAA ATATCCGGTT GAACGGATGG TGACCCTGGA ACATCTGCGT GAACTGGTCG AACAAGCCGA ACAGCAGGAT ATTCCGGCTG CGGAGTTACT TGATCCATTA CTGATGCCAA TGGACAGTCC AGCTTCGGAC TACCCGGTGG TGAATCTTCC GTTAACGTCT TCTGTTTACT TCAAAAATGG TAACCCAGTT CGTACATCCG GTGCGCCGCT GGAAGGACTG GTTCGCGTTA CAGAAGGTGA GAACGGCAAG TTTATCGGTA TGGGCGAAAT TGACGATGAA GGCCGCGTCG CGCCTCGTCG CCTGGTGGTT GAATACCCGG CGTAA
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Protein sequence | MSRPRRRGRD INGVLLLDKP QGMSSNDALQ KVKRIYNANR AGHTGALDPL ATGMLPICFG EATKFSQYLL DSDKRYRVIA RLGQRTDTSD ADGQIVEERP VTFSAEQLAA ALDTFRGDIE QIPSMYSALK YQGKKLYEYA RQGIEVPREA RPITVYELLF IRHEGNELEL EIHCSKGTYI RTIIDDLGEK LGCGAHVIYL RRLAVSKYPV ERMVTLEHLR ELVEQAEQQD IPAAELLDPL LMPMDSPASD YPVVNLPLTS SVYFKNGNPV RTSGAPLEGL VRVTEGENGK FIGMGEIDDE GRVAPRRLVV EYPA
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