Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3588 |
Symbol | dacB |
ID | 6269541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3338188 |
End bp | 3339621 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641727458 |
Product | D-alanyl-D-alanine carboxypeptidase/endopeptidase |
Protein accession | YP_001881903 |
Protein GI | 187730595 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000000000120922 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGATTTT CCAGATTTAT CATCGGATTG ACCAGCTGTA TAGCGTTCAG TGTTCAGGCC GCGAATGTTG ATGAGTACGT TACTCAACTC CCCGCTGGTG CCAACCTTGC CCTGATGGTG CAAAAAGTCG GCGCGTCGGC CCCCGCTATT GATTACCACA GTCAGCAGAT GGCGCTGCCC GCCAGTACGC AGAAAGTGAT TACTGCGCTG GCGGCGTTGA TTCAACTCGG CCCCGATTTT CGTTTCACCA CGACGCTTGA AACCAAAGGC AATGTGGAAA ACGGCGTACT TAAGGGTGAC TTAGTGGCGC GATTTGGTGC CGATCCGACG TTAAAACGTC AGGATATTCG CAATATGGTC GCGACTTTGA AAAAATCTGG CGTCAACCAA ATCGATGGCA ATGTGTTGAT AGATACCTCC ATTTTCGCCA GCCACGATAA AGCCCCCGGC TGGCCATGGA ATGACATGAC ACAATGCTTT AGCGCTCCGC CTGCCGCTGC CATAGTTGAC CGCAACTGTT TCTCCGTCTC GCTCTACAGT GCCCCAAAAC CTGGTGATAT GGCTTTTATA CGCGTGGCAT CTTATTACCC CGTTACGATG TTCAGCCAGG TACGCACCCT CCCCCGAGGT TCTGCCGAAG CGCAATACTG CGAACTGGAT GTCGTACCAG GCGACCTGAA CCGCTTTACG CTGACGGGAT GCCTGCCACA ACGTTCTGAG CCGCTCCCGT TGGCTTTTGC CGTGCAGGAT GGAGCCAGCT ATGCCGGGGC AATTCTGAAA GATGAGTTAA AACAGGCAGG TATCACCTGG AGCGGAACAC TGCTGCGCCA GACTCAGGTT AACGAACCTG GAACGGTAGT TGCCAGTAAA CAGTCGGCCC CGTTGCACGA TCTGCTTAAG ATTATGCTGA AAAAGTCGGA CAACATGATC GCCGATACGG TTTTCCGCAT GATAGGCCAT GCGCGCTTCA ATGTGCCTGG AACATGGCGG GCCGGGTCGG ACGCCGTGCG TCAGATCCTG CGCCAGCAAG CCGGTGTCGA TATTGGAAAC ACCATTATTG CCGATGGTTC AGGGCTTTCG CGGCATAACC TGATTGCCCC CGCCACCATG ATGCAGGTGT TGCAATACAT TGCCCAACAC GACAATGAAC TTAACTTTAT CTCCATGCTG CCGCTGGCGG GCTATGATGG CTCTTTGCAG TACCGTGCAG GTCTGCATCA GGCGGGCGTG GATGGAAAAG TCTCAGCGAA AACCGGTTCG TTGCAGGGGG TATATAACCT GGCGGGATTC ATTACCACAG CGAGCGGGCA ACGAATGGCG TTTGTACAAT ATCTTTCTGG CTATGCAGTA GAACCGGCGG ATCAGCGTAA TCGCCGTATT CCGTTAGTGC GTTTTGAAAG CCGTTTGTAT AAAGATATTT ATCAGAACAA TTAG
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Protein sequence | MRFSRFIIGL TSCIAFSVQA ANVDEYVTQL PAGANLALMV QKVGASAPAI DYHSQQMALP ASTQKVITAL AALIQLGPDF RFTTTLETKG NVENGVLKGD LVARFGADPT LKRQDIRNMV ATLKKSGVNQ IDGNVLIDTS IFASHDKAPG WPWNDMTQCF SAPPAAAIVD RNCFSVSLYS APKPGDMAFI RVASYYPVTM FSQVRTLPRG SAEAQYCELD VVPGDLNRFT LTGCLPQRSE PLPLAFAVQD GASYAGAILK DELKQAGITW SGTLLRQTQV NEPGTVVASK QSAPLHDLLK IMLKKSDNMI ADTVFRMIGH ARFNVPGTWR AGSDAVRQIL RQQAGVDIGN TIIADGSGLS RHNLIAPATM MQVLQYIAQH DNELNFISML PLAGYDGSLQ YRAGLHQAGV DGKVSAKTGS LQGVYNLAGF ITTASGQRMA FVQYLSGYAV EPADQRNRRI PLVRFESRLY KDIYQNN
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