| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3557 |
|---|
| Symbol | gltD |
|---|
| ID | 6272919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 3308087 |
|---|
| End bp | 3309505 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641727427 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_001881873 |
|---|
| Protein GI | 187733386 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGA ATGTTTATCA ATTTATCGAC CTGCAGCGCG TTGATCCGCC TAAGAAACCG
CTGAAGATCC GCAAAATTGA GTTTGTTGAA ATTTACGAGC CGTTTTCCGA AGGCCAGGCC
AAAGCGCAGG CTGACCGCTG CCTGTCGTGC GGCAACCCAT ACTGCGAGTG GAAATGTCCG
GTACACAACT ACATCCCGAA CTGGCTGAAG CTCGCCAACG AGGGGCGTAT TTTTGAAGCG
GCGGAACTGT CGCACCAGAC CAACACCCTG CCGGAAGTTT GCGGACGAGT CTGCCCGCAA
GACCGTCTGT GCGAAGGTTC CTGCACTCTG AACGATGAGT TTGGCGCGGT GACCATCGGC
AACATTGAGC GTTATATCAA TGATAAAGCG TTCGAAATGG GCTGGCGTCC GGATATGTCC
GGCGTGAAGC AAACCGGTAA AAAAGTGGCG ATTATCGGCG CAGGCCCGGC AGGTCTGGCG
TGTGCGGATG TCCTGACGCG TAACGGCGTA AAAGCCGTTG TCTTCGACCG TCATCCAGAA
ATTGGCGGGC TGCTGACCTT CGGTATTCCG GCCTTCAAGC TGGAAAAAGA GGTAATGACG
CGTCGCCGTG AAATCTTCAC CGGCATGGGT ATTGAATTCA AACTCAATAC CGAAGTGGGC
CGCGACGTGC AGCTGGACGA TCTGCTGAGT GATTACGATG CCGTCTTCCT TGGCGTCGGG
ACTTATCAGT CAATGCGCGG CGGGCTGGAA AACGAAGACG CCGATGGCGT GTACGCAGCG
CTGCCGTTCC TTATCGCCAA CACCAAACAG TTAATGGGCT TTGGTGAAAC CCGCGACGAA
CCGTTCGTCA GCATGGAAGG CAAACGCGTG GTGGTCCTTG GCGGTGGCGA CACTGCGATG
GACTGCGTGC GTACGTCCGT GCGCCAGGGA GCGAAGCACG TTACCTGTGC CTATCGTCGT
GATGAAGAGA ACATGCCGGG TTCCCGCCGC GAAGTGAAAA ACGCGCGGGA AGAAGGCGTA
GAGTTCAAAT TCAACGTCCA GCCACTGGGG ATTGAAGTGA ACGGTAACGG CAAAGTCAGC
GGCGTAAAAA TGGTACGTAC CGAAATGGGC GAACCGGATG CCAAAGGCCG TCGCCGCGCG
GAGATCGTTG CAGGTTCCGA ACATATCGTT CCGGCAGATG CAGTGATCAT GGCGTTTGGT
TTCCGTCCAC ACAACATGGA ATGGCTGGCA AAACACAGCG TCGAGCTGGA TTCACAAGGC
CGCATCATCG CCCCGGAAGG CAGCGACAAC GCCTTCCAGA CCAGCAACCC GAAAATCTTT
GCTGGCGGCG ATATCGTCCG TGGTTCCGAT CTGGTGGTAA CCGCTATTGC CGAAGGTCGT
AAGGCGGCAG ACGGTATTAT GAACTGGCTG GAAGTTTAA
|
|---|
| Protein sequence | MSQNVYQFID LQRVDPPKKP LKIRKIEFVE IYEPFSEGQA KAQADRCLSC GNPYCEWKCP
VHNYIPNWLK LANEGRIFEA AELSHQTNTL PEVCGRVCPQ DRLCEGSCTL NDEFGAVTIG
NIERYINDKA FEMGWRPDMS GVKQTGKKVA IIGAGPAGLA CADVLTRNGV KAVVFDRHPE
IGGLLTFGIP AFKLEKEVMT RRREIFTGMG IEFKLNTEVG RDVQLDDLLS DYDAVFLGVG
TYQSMRGGLE NEDADGVYAA LPFLIANTKQ LMGFGETRDE PFVSMEGKRV VVLGGGDTAM
DCVRTSVRQG AKHVTCAYRR DEENMPGSRR EVKNAREEGV EFKFNVQPLG IEVNGNGKVS
GVKMVRTEMG EPDAKGRRRA EIVAGSEHIV PADAVIMAFG FRPHNMEWLA KHSVELDSQG
RIIAPEGSDN AFQTSNPKIF AGGDIVRGSD LVVTAIAEGR KAADGIMNWL EV
|
|---|
| |