| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3541 |
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| Symbol | degS |
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| ID | 6273214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 3292775 |
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| End bp | 3293842 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641727412 |
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| Product | serine endoprotease |
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| Protein accession | YP_001881858 |
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| Protein GI | 187731547 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.360038 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGTGA AGCTCTTACG TTCCGTTGCG ATTGGATTAA TTGTCGGCGC TATTCTGCTG
GTTGCCATGC CTTCGCTGCG CAGCCTTAAC CCGCTTTCCA CTCCGCAATT TGACAGTACC
GATGAGACGC CTGCCAGCTA TAATCTGGCG GTTCGCCGCG CCGCGCCAGC GGTGGTTAAC
GTTTACAACC GTGGTGTGAA CACCAACTCT CACAACCAGC TTGAGATCCG CACCCTGGGA
TCCGGTGTAA TCATGGATCA ACGCGGTTAT ATCATCACCA ATAAACACGT CATCAACGAC
GCCGATCAGA TCATCGTCGC CTTACAGGAT GGACGTGTAT TTGAAGCATT GCTGGTGGGA
TCTGACTCTC TAACCGATCT GGCGGTACTT AAAATTAATG CCACTGGCGG TTTACCTACC
ATTCCAATTA ATGCACGTCG CGTACCGCAC ATTGGCGACG TAGTACTGGC GATCGGTAAC
CCGTACAACC TCGGGCAGAC CATTACCCAA GGGATTATTA GTGCCACGGG TCGAATCGGT
CTGAACCCTA CCGGGCGGCA AAACTTCCTA CAAACCGATG CTTCCATTAA CCACGGTAAC
TCTGGTGGCG CGCTGGTGAA CTCGCTGGGA GAACTGATGG GCATTAACAC GCTGTCGTTT
GATAAGAGTA ACGATGGCGA AACGCCGGAA GGTATCGGCT TTGCGATTCC TTTCCAGTTA
GCAACCAAAA TTATGGATAA GCTGATCCGC GATGGGCGCG TGATCCGCGG CTACATTGGC
ATTGGTGGAC GTGAGATCGC ACCACTGCAC GCGCAGAGCG GTGGTATAGA TCAACTGCAA
GGGATCGTGG TTAATGAAGT GTCACCTGAC GGCCCGGCGG CGAATGCGGG TATTCAGGTC
AACGATCTGA TTATTTCGGT GGATAACAAA CCGGCCATCT CTGCTCTGGA GACGATGGAT
CAGGTGGCAG AAATTCGCCC TGGTTCGGTG ATCCCGGTTG TAGTGATGCG TGATGATAAG
CAGTTAACGC TGCAGGTCAC CATTCAGGAA TATCCGGCAA CCAATTAA
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| Protein sequence | MFVKLLRSVA IGLIVGAILL VAMPSLRSLN PLSTPQFDST DETPASYNLA VRRAAPAVVN
VYNRGVNTNS HNQLEIRTLG SGVIMDQRGY IITNKHVIND ADQIIVALQD GRVFEALLVG
SDSLTDLAVL KINATGGLPT IPINARRVPH IGDVVLAIGN PYNLGQTITQ GIISATGRIG
LNPTGRQNFL QTDASINHGN SGGALVNSLG ELMGINTLSF DKSNDGETPE GIGFAIPFQL
ATKIMDKLIR DGRVIRGYIG IGGREIAPLH AQSGGIDQLQ GIVVNEVSPD GPAANAGIQV
NDLIISVDNK PAISALETMD QVAEIRPGSV IPVVVMRDDK QLTLQVTIQE YPATN
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