Gene SbBS512_E3468 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3468 
SymboltolC 
ID6270785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp3222921 
End bp3224408 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content52% 
IMG OID641727353 
Productouter membrane channel protein 
Protein accessionYP_001881802 
Protein GI187730816 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0175451 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAATGA AGAAATTGCT CCCCATTCTT ATCGGCCTGA GCCTTTCTGG GTTCAGTTCG 
TTGAGCCAGG CCGAGAACCT GATGCAAGTT TATCAGCAAG CACGCCTTAG TAACCCGGAA
TTGCGTAAGT CTGCCGCCGA TCGTGATGCT GCCTTTGAAA AAATTAATGA AGCGCGCAGT
CCATTACTGC CACAGCTAGG TTTAGGTGCA GATTACACCT ATAGCAACGG CTACCGCGAC
GCGAACGGCA TCAACTCGAA CGCGACCAGT GCGTCCCTGC AGTTAGCTCA ATCCATTTTT
GATATGTCGA AATGGCGTGC GTTAACGCTG CAGGAAAAAG CAGCAGGGAT TCAGGACGTC
ACATATCAGA CCGATCAGCA AACCTTGATC CTCAACACCG CGACCGCTTA TTTCAACGTG
TTGAATGCTA TTGACGTTCT TTCCTATACA CAGGCACAAA AAGAAGCGAT CTACCGTCAA
TTAGATCAAA CCACCCAACG TTTTAACGTG GGCCTGGTAG CGATCACCGA CGTGCAGAAC
GCCCGCGCGC AGTACGATAC CGTGCTGGCG AACGAAGTGA CCGCACGTAA TAACCTTGAT
AACGCGGTAG AGCAGCTGCG CCAGATCACC GGTAACTACT ATCCGGAACT GGCGGCGCTG
AATGTCGAAA ACTTTAAAAC CGACAAACCA CAGCCGGTTA ACGCGCTGCT GAAAGAAGCC
GAAAAACGCA ACCTGTCGCT GTTACAGGCA CGCTTGAGCC AGGACCTGGC GCGCGAGCAA
ATTCGCCAGG CGCAGGATGG TCACTTACCG ACGCTGGATT TAACGGCTTC TACCGGGATT
TCTGACACCT CTTATAGCGG TTCGAAAACT CGTGGTGCCG CTGGTACCCA GTATGACGAC
AGCAATATGG GCCAGAACAA AGTGGGCCTG AGCTTCTCGC TGCCGATTTA TCAGGGCGGA
ATGGTTAACT CGCAGGTGAA ACAGGCCCAG TACAACTTTG TTGGTGCCAG CGAGCAACTG
GAAAGCGCGC ATCGTAGCAT CGTGCAAACC GTACGTTCCT CCTTCAACAA CATTAATGCA
TCTATCAGTA GCATTAACGC CTACAAACAA GCCGTAGTTT CCGCTCAAAG CTCATTAGAC
GCGATGGAAG CGGGCTACTC GGTCGGTACG CGTACCATTG TTGATGTGTT GGATGCAACC
ACCACGCTGT ACAACGCTAA GCAAGAGCTG GCAAATGCGC GTTATAACTA CCTGATTAAT
CAGCTGAATA TTAAGTCAGC CCTGGGTACG TTGAACGAGC AGGATCTGCT GGCACTGAAC
AATGCGCTGA GCAAACCGGT TTCCACTAAT CCGGAAAACG TTGCCCCGCA AACGCCGGAA
CAGAATGCTA TTGCTGATGG TTATGCGCCT GATAGCCCGG CACCCGTCGT TCAGCAAACA
TCCGCACGCA CTACCACCAG TAACGGTCAT AACCCTTTCC GTAACTGA
 
Protein sequence
MQMKKLLPIL IGLSLSGFSS LSQAENLMQV YQQARLSNPE LRKSAADRDA AFEKINEARS 
PLLPQLGLGA DYTYSNGYRD ANGINSNATS ASLQLAQSIF DMSKWRALTL QEKAAGIQDV
TYQTDQQTLI LNTATAYFNV LNAIDVLSYT QAQKEAIYRQ LDQTTQRFNV GLVAITDVQN
ARAQYDTVLA NEVTARNNLD NAVEQLRQIT GNYYPELAAL NVENFKTDKP QPVNALLKEA
EKRNLSLLQA RLSQDLAREQ IRQAQDGHLP TLDLTASTGI SDTSYSGSKT RGAAGTQYDD
SNMGQNKVGL SFSLPIYQGG MVNSQVKQAQ YNFVGASEQL ESAHRSIVQT VRSSFNNINA
SISSINAYKQ AVVSAQSSLD AMEAGYSVGT RTIVDVLDAT TTLYNAKQEL ANARYNYLIN
QLNIKSALGT LNEQDLLALN NALSKPVSTN PENVAPQTPE QNAIADGYAP DSPAPVVQQT
SARTTTSNGH NPFRN