Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3435 |
Symbol | metC |
ID | 6268579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 3194793 |
End bp | 3195980 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641727321 |
Product | cystathionine beta-lyase |
Protein accession | YP_001881770 |
Protein GI | 187733848 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCGGACA AAAAGCTTGA TACTCAACTG GTGAATGCAG GACGCAGCAA AAAATACACT CTTGGCGCGG TAAATAGCGT GATTCAGCGC GCTTCTTCGC TGGTATTTGA GAGTATGGAA GCCAAAAAGC ACGCGACGCG CAATCGCGCC AATGGCGAGT TGTTCTATGG ACGGCGCGGA ACGTTAACCC ATTTTTCCTT ACAACAAGCG ATGTGTGAAC TGGAAGGTGG CGCAGGCTGC GCGCTATTTC CCTGCGGGGC GGCAGCGGTT GCTAATTCGA TTCTTGCTTT TGTCGAACAG GGCGATCATG TGTTGATGAC CAACACTGCC TATGAACCGA GTCAGGATTT CTGTAGCAAA ATCCTCAGCA AACTGGGCGT AACGACATCG TGGTTTGATC CGCTGATTGG TGCCGATATC GTTAAGCATC TGCAGCCAAA CACTAAAATC GTGTTTCTGG AATCGCCAGG CTCCATCACC ATGGAAGTCC ACGACGTTCC GGCGATTGTT GCCGCCGTAC GCAGTGTGGT GCCGGATGCC ATCATTATGA TCGACAACAC CTGGGCAGCC GGTGTGCTGT TTAAGGCGCT GGATTTTGGC ATCGATGTTT CTATTCAAGC CGCCACCAAA TATCTGGTTG GGCATTCAGA TGCGATGATT GGCACTGCCG TGTGCAATGC CCGTTGCTGG GAGCAGCTAC GGGAAAACGC CTATCTGATG GGCCAGATGG TCGATGCCGA TACCGCCTAT ATAACCAGCC GTGGCCTGCG CACATTAGGT GTGCGTTTGC GTCAACATCA TGAAAGCAGT CTGAAAGTGG CTGAATGGCT GGCAGAACAT CCGCAAGTAG CGCGAGTTAA CCACCCTGCT CTGCCTGGCA GTAAAGGACA CGAATTCTGG AAACGAGACT TTACAGGTAG CAGCGGGCTG TTTTCCTTTG TGCTTAAGAA AAAACTCAGT AATGAAGAGC TGGCGAACTA TCTGGATAAC TTCAGTTTAT TCAGCATGGC CTACTCGTGG GGCGGGTATG AATCGTTGAT CCTGGCGAAT CAACCAGAAC ATATCGCCGC CATTCGCCCA CAAGGCGAGA TCGATTTTAG CGGGACCTTG ACTCGCCTGC ATATTGGTCT GGAAGATGTC GACGATCTGA TTGCCGATCT GGACGCCGGT TTTGCGCGAA TTGTATAA
|
Protein sequence | MADKKLDTQL VNAGRSKKYT LGAVNSVIQR ASSLVFESME AKKHATRNRA NGELFYGRRG TLTHFSLQQA MCELEGGAGC ALFPCGAAAV ANSILAFVEQ GDHVLMTNTA YEPSQDFCSK ILSKLGVTTS WFDPLIGADI VKHLQPNTKI VFLESPGSIT MEVHDVPAIV AAVRSVVPDA IIMIDNTWAA GVLFKALDFG IDVSIQAATK YLVGHSDAMI GTAVCNARCW EQLRENAYLM GQMVDADTAY ITSRGLRTLG VRLRQHHESS LKVAEWLAEH PQVARVNHPA LPGSKGHEFW KRDFTGSSGL FSFVLKKKLS NEELANYLDN FSLFSMAYSW GGYESLILAN QPEHIAAIRP QGEIDFSGTL TRLHIGLEDV DDLIADLDAG FARIV
|
| |