| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3408 |
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| Symbol | gspH |
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| ID | 6271893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 3168979 |
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| End bp | 3169542 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641727297 |
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| Product | general secretion pathway protein GspH |
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| Protein accession | YP_001881746 |
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| Protein GI | 187732248 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCCTGAAC GCGGATTCAC ACTTCTGGAA ATCATGCTGG TGATTTTCCT TATCGGCCTT
GCCAGTGCGG GCGTGGTACA GACGTTTGCG ACCGATTCTG AACCGCCCGC GAAAAAAGCG
GCACAGGATT TTCTGACTCG CTTTGCGCAG TTTAATGACA GGGCAGTGAT TGAAGGACAG
ACACTCGGTG TGCTAATCGA CCCGCCTGGC TATCAGTTTA TGCAGCGTCG TCAGGGGCAG
TGGTTGCCCG TTTCTGCGAC CCGGTTATCG GCACAGGTTA CGGTGCCGAA ACAGGTGCAG
ATGCTGTTAC AACCCGGAAG TGATATCTGG CAGAAGGAAT ATGCGCTGGA GCTGCAACGT
CGTCGCCTGA CGCTGCACGA TATTGAACTG GAGTTGCAAA AAGAGGCGAA AAAGAAGACG
CCGCAGATCC GTTTTTCGCC TTTTGAACCC GCCACGCCGT TTACGCTGCG CTTCTACTCG
GCGGCGCAAA ACGCATGTTG GGCGGTAAAG CTGGCACACG ATGGCGCGTT ATCCCTCAAT
CAATGTGATG AGAGGATGCC ATGA
|
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| Protein sequence | MPERGFTLLE IMLVIFLIGL ASAGVVQTFA TDSEPPAKKA AQDFLTRFAQ FNDRAVIEGQ
TLGVLIDPPG YQFMQRRQGQ WLPVSATRLS AQVTVPKQVQ MLLQPGSDIW QKEYALELQR
RRLTLHDIEL ELQKEAKKKT PQIRFSPFEP ATPFTLRFYS AAQNACWAVK LAHDGALSLN
QCDERMP
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