Gene SbBS512_E3371 details

Gene Information

• Locus tag: SbBS512_E3371
• Symbol: speA
• ID: 6270343
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 3137154
• End bp: 3139130
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 641727262
• Product: arginine decarboxylase
• Protein accession: YP_001881712
• Protein GI: 187731827
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 0.575173
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGACG ACATGTCTAT GGGTTTGCCT TCGTCAGCGG GCGAACACGG TGTACTACGC 
TCCATGCAGG AGGTTGCAAT GAGCTCCCAG GAAGCCAGCA AGATGCTGCG TACTTACAAT 
ATTGCCTGGT GGGGCAATAA CTACTATGAC GTTAACGAGC TGGGCCACAT CAGCGTGTGC 
CCGGACCCGG ACGTCCCGGA AGCTCGCGTC GATCTCGCGC AGTTAGTGAA AACTCGTGAA 
GCACAGGGTC AGCGTCTGCC TGCACTGTTC TGTTTCCCAC AGATCCTGCA GCACCGTTTG 
CGTTCCATTA ACGCCGCGTT CAAACGTGCG AGGGAATCCT ACGGCTATAA CGGCGATTAC 
TTCCTTGTTT ATCCGATCAA AGTTAACCAG CACCGCCGCG TGATTGAGTC CCTGATTCAT 
TCGGGCGAAC CGCTGGGTCT GGAAGCCGGT TCCAAAGCCG AGTTGATGGC AGTGCTGGCA 
CATGCTGGCA TGACCCGTAG CGTCATCGTC TGCAACGGTT ATAAAGACCG CGAATATATC 
CGCCTGGCAT TAATTGGCGA GAAGATGGGG CACAAGGTCT ATCTGGTCAT TGAGAAGATG 
TCAGAAATCG CCATTGTGCT GGATGAAGCA GAACGTCTGA ATGTCGTTCC TCGTCTGGGC 
GTGCGTGCAC GTCTGGCTTC GCAGGGCTCG GGTAAATGGC AGTCTTCCGG CGGGGAAAAA 
TCGAAGTTCG GCCTGGCTGC GACTCAGGTA CTGCAACTGG TTGAAACGCT GCGTGAAGCT 
GGGCGTCTCG ACAGCCTGCA ACTACTGCAC TTCCACCTCG GTTCGCAGAT GGCGAATATT 
CGCGATATCG CCACGGGCGT TCGTGAATCC GCGCGTTTCT ATGTGGAACT GCACAAGCTG 
GGCGTCAATA TTCAGTGCTT CGACGTCGGC GGCGGTCTGG GCGTGGACTA TGAAGGCACC 
CGTTCGCAGT CTGACTGCTC CGTAAACTAC GGCCTCAATG AATATGCCAA CAACATCATC 
TGGGCGATTG GTGATGCGTG TGAAGAAAAC GGTCTGCCGC ATCCGACGGT AATCACCGAA 
TCGGGTCGTG CGGTGACTGC GCATCACACC GTGCTGGTGT CTAATATCAT CGGCGTGGAA 
CGTAACGAAT ACACGGTGCC GACCGCGCCT GCAGAAGATG CGCCGCGCGC GCTGCAAAGC 
ATGTGGGAAA CCTGGCAGGA GATGCACGAA CCGGGAACTC GCCGTTCTCT GCGTGAATGG 
TTACACGACA GTCAGATGGA TCTGCACGAC ATTCATATCG GCTACTCTTC CGGCACCTTT 
AGCCTGCAAG AACGTGCATG GGCAGAACAA CTCTATCTGA GCATGTGCCA TGAAGTGCAG 
AAGCAACTGG ATCCGCAAAA CCGTGCGCAT CGTCCGATAA TCGACGAACT GCAGGAACGT 
ATGGCGGACA AAATGTACGT CAATTTCTCG CTGTTCCAGT CAATGCCGGA CGCATGGGGG 
ATCGACCAGT TGTTCCCGGT TCTGCCGCTG GAAGGGCTGG ATCAAGTGCC GGAACGTCGC 
GCTGTGCTGC TGGATATTAC CTGTGACTCT GACGGTGCTA TCGACCACTA TATTGATGGT 
GATGGTATTG CCACGACAAT GCCAATGCCG GAGTACGATC CAGAGAATCC GCCGATGCTC 
GGTTTCTTTA TGGTCGGCGC ATATCAGGAG ATCCTCGGCA ACATGCACAA CCTGTTCGGT 
GATACCGAAG CGGTTGACGT GTTCGTCTTC CCTGACGGTA GTGTAGAAGT GGAACTGTCT 
GACGAAGGCG ATACCGTTGC GGATATGCTG CAATATGTGC AGCTCGATCC GAAAACGCTG 
TTAACTCAGT TCCGCGATCA AGTGAAGAAA ACCGATCTTG ATGCTGAACT GCAACAACAG 
TTCCTTGAAG AGTTCGAGGC AGGTTTGTAC GGTTATACTT ATCTGGAAGA TGAGTAA 

 

Protein sequence

MSDDMSMGLP SSAGEHGVLR SMQEVAMSSQ EASKMLRTYN IAWWGNNYYD VNELGHISVC 
PDPDVPEARV DLAQLVKTRE AQGQRLPALF CFPQILQHRL RSINAAFKRA RESYGYNGDY 
FLVYPIKVNQ HRRVIESLIH SGEPLGLEAG SKAELMAVLA HAGMTRSVIV CNGYKDREYI 
RLALIGEKMG HKVYLVIEKM SEIAIVLDEA ERLNVVPRLG VRARLASQGS GKWQSSGGEK 
SKFGLAATQV LQLVETLREA GRLDSLQLLH FHLGSQMANI RDIATGVRES ARFYVELHKL 
GVNIQCFDVG GGLGVDYEGT RSQSDCSVNY GLNEYANNII WAIGDACEEN GLPHPTVITE 
SGRAVTAHHT VLVSNIIGVE RNEYTVPTAP AEDAPRALQS MWETWQEMHE PGTRRSLREW 
LHDSQMDLHD IHIGYSSGTF SLQERAWAEQ LYLSMCHEVQ KQLDPQNRAH RPIIDELQER 
MADKMYVNFS LFQSMPDAWG IDQLFPVLPL EGLDQVPERR AVLLDITCDS DGAIDHYIDG 
DGIATTMPMP EYDPENPPML GFFMVGAYQE ILGNMHNLFG DTEAVDVFVF PDGSVEVELS 
DEGDTVADML QYVQLDPKTL LTQFRDQVKK TDLDAELQQQ FLEEFEAGLY GYTYLEDE