Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3309 |
Symbol | lysS |
ID | 6270316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3080395 |
End bp | 3081912 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641727208 |
Product | lysyl-tRNA synthetase |
Protein accession | YP_001881660 |
Protein GI | 187730899 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.97294 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTGAAC AACACGCACA GGGCGCTGAC GCGGTAGTCG ATCTTAACAA TGAACTGAAA ACGCGTCGTG AGAAGCTGGC GAACCTGCGT GAGCAGGGAA TTGCCTTCCC GAACGATTTC CGTCGCGATC ATACCTCTGA CCAATTGCAC GCAGAATTCG ACGGTAAAGA GAACGAAGAA CTGGAAGCGC TGAACATCGA AGTCGCCGTT GCTGGCCGCA TGATGACCCG CCGTATTATG GGTAAAGCCT CTTTTGTTAC CCTGCAGGAC GTTGGCGGTC GTATTCAGCT GTACGTTGCC CGTGACGATC TTCCGGAAGG CGTTTACAAC GAGCAGTTCA AAAAATGGGA TCTCGGCGAC ATCCTCGGCG CGAAAGGTAA ACTGTTCAAA ACCAAAACCG GCGAACTGTC TATCCACTGC ACCGAGCTGC GTCTGCTGAC CAAAGCACTG CGTCCGCTGC CGGACAAATT CCACGGCTTG CAGGATCAGG AAGCGCGCTA TCGTCAGCGT TATCTGGATC TCATCTCTAA CGATGAATCC CGCAACACCT TTAAAGTGCG TTCGCAGATC CTCTCTGGCA TTCGCCAGTT CATGGTAAAT CGCGGCTTTA TGGAAGTTGA AACGCCGATG ATGCAGGTGA TCCCAGGCGG TGCCGCTGCG CGTCCGTTTA TCACCCATCA TAACGCGCTG GATCTTGACA TGTACCTGCG TATCGCGCCG GAACTGTACC TCAAGCGTCT GGTGGTCGGT GGCTTCGAGC GTGTATTCGA AATCAACCGT AACTTCCGTA ACGAAGGTAT TTCCGTACGT CATAACCCAG AGTTCACCAT GATGGAACTC TATATGGCTT ACGCAGATTA CAAAGATCTG ATCGAGCTGA CCGAATCGCT GTTCCGTACT CTGGCACAGG ATATTCTCGG TAAGACGGAA GTCACCTACG GCGACGTGAC GCTGGACTTC GGTAAACCGT TCGAAAAACT GACCATGCGT GAAGCGATCA AGAAATATCG CCCGGAAACC GACATGGCGG ATCTGGACAA CTTCGACTCT GCAAAAGCGA TTGCTGAATC TATCGGCATC CACGTTGAGA AGAGCTGGGG TCTGGGCCGT ATCGTTACCG AGATCTTCGA AGAAGTGGCA GAAGCACATC TGATTCAGCC GACCTTCATT ACTGAATATC CGGCAGAAGT TTCTCCGCTG GCGCGTCGTA ACGACATTAA CCCGGAAATC ACAGACCGCT TTGAGTTCTT CATCGGTGGT CGTGAAATCG GTAACGGCTT TAGCGAGCTG AATGACGCGG AAGATCAGGC GCAGCGCTTC CTGGATCAGG TTGCCGCGAA AGACGCAGGT GACGACGAAG CGATGTTCTA CGACGAAGAT TACGTCACCG CACTGGAACA CGGCTTACCG CCGACAGCAG GTCTGGGAAT TGGTATCGAC CGTATGGTAA TGCTGTTCAC CAACAGCCAT ACCATCCGCG ACGTTATTCT GTTCCCGGCG ATGCGTCCAG TAAAATAA
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Protein sequence | MSEQHAQGAD AVVDLNNELK TRREKLANLR EQGIAFPNDF RRDHTSDQLH AEFDGKENEE LEALNIEVAV AGRMMTRRIM GKASFVTLQD VGGRIQLYVA RDDLPEGVYN EQFKKWDLGD ILGAKGKLFK TKTGELSIHC TELRLLTKAL RPLPDKFHGL QDQEARYRQR YLDLISNDES RNTFKVRSQI LSGIRQFMVN RGFMEVETPM MQVIPGGAAA RPFITHHNAL DLDMYLRIAP ELYLKRLVVG GFERVFEINR NFRNEGISVR HNPEFTMMEL YMAYADYKDL IELTESLFRT LAQDILGKTE VTYGDVTLDF GKPFEKLTMR EAIKKYRPET DMADLDNFDS AKAIAESIGI HVEKSWGLGR IVTEIFEEVA EAHLIQPTFI TEYPAEVSPL ARRNDINPEI TDRFEFFIGG REIGNGFSEL NDAEDQAQRF LDQVAAKDAG DDEAMFYDED YVTALEHGLP PTAGLGIGID RMVMLFTNSH TIRDVILFPA MRPVK
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