Gene SbBS512_E3284 details

Gene Information

• Locus tag: SbBS512_E3284
• ID: 6270714
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 3058210
• End bp: 3060150
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641727190
• Product: regulatory protein CsrD
• Protein accession: YP_001881643
• Protein GI: 187731335
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.000365395
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGATTAA CGACGAAATT TTCGGCCTTT GTTACGCTGC TCACCGGGTT AACAATTTTT 
GTGACTTTGC TGGGCTGTTC GCTAAGTTTC TACAACGCAA TTCAGTATAA GTTTAGTCAT 
CGCGTTCAGG CGGTGGCGAC GGCGATTGAT ACCCACCTTG TGTCGAATGA CTTCAGCACA 
TTAAGGCCAC AAATTACCGA ATTAATGATG TCGGCAGATA TCGTTCGTGT AGGCCTGCTC 
CATGGTGATA AACAGGTTTA TACCCTGGCC AGAAATGGTA GTTATCGTCC GGTTGGCTCC 
AGCGATCTGT TTCGTGAACT GAGCGTTCCG TTGATAAAGC ATCCGGGGAT GTCGCTGCGT 
CTGGTTTATC AGGATCCGAT GGGCAACTAT TTCCATTCGT TGATGACCAC CGCGCCGCTC 
ACGGGGGCGA TTAGCTTTAT CATTGTTATG CTCTTCTTGG CGGTACGCTG GTTACAACGG 
CAACTTGCCG GGCAAGAATT GCTGGAAACC CGGGCTACTC GTATCTTAAA CGGTGAGCGT 
GGCTCTAATG TGTTGGGAAC CATCTATGAA TGGCCGCCCA GAACCAGCAG TGCGCTGGAT 
ACGCTGCTTC GTGAAATTCA GAACGCACGC GAACAACACA GCCGTCTTGA TACGCTGATC 
CGCTCTTATG CCGCCCAGGA CGTGAAAACC GGCCTCAATA ACCGACTCTT TTTCGATAAT 
CAGTTAGCAA CGTTACTGGA AGATCAGGAG AAAGTAGGTA CCCACGGGAT CGTGATGATG 
ATTCGTCTGC CGGATTTCAA TATGTTGAGC GATACTTGGG GGCACAGCCA GGTTGAAGAA 
CAGTTCTTCA CTCTGACGAA TCTGCTGTCG ACATTTATGA TGCGCTACCC TGGCGCACTG 
CTGGCGCGTT ACCACCGCAG TGATTTTGCT GCGCTGTTAC CGCACCGGAC GTTAAAAGAG 
GCAGAGAGCA TCGCCGGTCA GTTAATCAAA GCCGTCGATA CCTTGCCGAA CAATAAAATG 
CTCGATCGCG ACGATATGAT CCACATTGGT ATCTGCGCCT GGCGTAGTGG TCAGGATACC 
GAGCAGGTAA TGGAACATGC AGAGTCTGCC ACGCGTAATG CGGGATTGCA GGGCGGCAAT 
AGCTGGGCTA TTTACGATGA CTCGTTGCCT GAAAAAGGAC GCGGTAATGT TCGCTGGCGT 
ACGCTTATCG AGCAAATGCT CAGTCGCGGC GGCCCGCGCC TTTATCAAAA ACCGGCGGTT 
ACTCGCGAAG GTCAGGTTCA TCATCGCGAA CTCATGTGCC GCATCTTCGA TGGTAATGAA 
GAGGTTAGCT CGGCGGAGTA TATGCCGATG GTCTTGCAGT TTGGCTTATC GGAAGAGTAT 
GACCGTCTGC AAATCAGCCG TCTTATTCCA CTATTGCGGT ACTGGCCAGA GGAAAATCTG 
GCGATTCAGG TTACCGTTGA GTCGCTGATT CGCCCGCGTT TTCAGCGTTG GCTGCGCGAT 
ACGTTAATGC AATGTGAAAA ATCACAACGA AAACGCATAA TTATTGAACT TGCAGAGGCC 
GATGTAGGTC AACATATCAG TCGTTTACAA CCTGTTATTC GTTTAGTGAA TGCTTTAGGG 
GTACGGGTAG CCGTCAACCA GGCTGGTTTG ACGCTGGTAA GCACCAGTTG GATCAAAGAA 
CTTAATGTTG AGTTACTCAA GCTCCATCCG GGGCTGGTCA GAAACATTGA GAAGCGAACG 
GAGAACCAGC TGCTGGTTCA AAGCCTGGTG GAAGCCTGCT CCGGGACCAG CACCCAGGTT 
TACGCCACCG GTGTGCGTTC GCGAAGCGAG TGGCAGACCC TGATTCAGCG CGGTGTTACA 
GGCGGGCAAG GGGATTTTTT CGCGTCCTCA CAGCCACTTG ATACTAACGT GAAAAAATAT 
TCACAAAGAT ACTCGGTTTA A 

 

Protein sequence

MRLTTKFSAF VTLLTGLTIF VTLLGCSLSF YNAIQYKFSH RVQAVATAID THLVSNDFST 
LRPQITELMM SADIVRVGLL HGDKQVYTLA RNGSYRPVGS SDLFRELSVP LIKHPGMSLR 
LVYQDPMGNY FHSLMTTAPL TGAISFIIVM LFLAVRWLQR QLAGQELLET RATRILNGER 
GSNVLGTIYE WPPRTSSALD TLLREIQNAR EQHSRLDTLI RSYAAQDVKT GLNNRLFFDN 
QLATLLEDQE KVGTHGIVMM IRLPDFNMLS DTWGHSQVEE QFFTLTNLLS TFMMRYPGAL 
LARYHRSDFA ALLPHRTLKE AESIAGQLIK AVDTLPNNKM LDRDDMIHIG ICAWRSGQDT 
EQVMEHAESA TRNAGLQGGN SWAIYDDSLP EKGRGNVRWR TLIEQMLSRG GPRLYQKPAV 
TREGQVHHRE LMCRIFDGNE EVSSAEYMPM VLQFGLSEEY DRLQISRLIP LLRYWPEENL 
AIQVTVESLI RPRFQRWLRD TLMQCEKSQR KRIIIELAEA DVGQHISRLQ PVIRLVNALG 
VRVAVNQAGL TLVSTSWIKE LNVELLKLHP GLVRNIEKRT ENQLLVQSLV EACSGTSTQV 
YATGVRSRSE WQTLIQRGVT GGQGDFFASS QPLDTNVKKY SQRYSV