Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3190 |
Symbol | emrB |
ID | 6271197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 2978706 |
End bp | 2980253 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641727106 |
Product | multidrug resistance protein B |
Protein accession | YP_001881560 |
Protein GI | 187730572 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0313882 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACAGC AAAAACCGCT GGAAGGCGCG CAACTGGTCA TTATGACGAT TGCGCTGTCA CTGGCGACAT TCATGCAGGT GCTGGACTCC ACCATTGCTA ACGTGGCGAT CCCCACTATC GCCGGGAATC TGGGCTCATC GCTCAGCCAG GGAACGTGGG TAATCACTTC TTTCGGGGTG GCGAATGCCA TCTCGATCCC GCTTACCGGC TGGCTGGCAA AGCGCGTCGG GGAAGTGAAA CTGTTCCTTT GGTCCACCAT CGCCTTTGCT ATTGCGTCGT GGGCGTGTGG TGTCTCCAGC AGCCTGAATA TGCTGATCTT CTTCCGTGTG ATTCAGGGGA TTGTCGCTGG GCCGTTGATC CCACTTTCGC AAAGTCTTTT GCTGAATAAT TACCCGCCAG CCAAACGCTC AATCGCGCTG GCGTTGTGGT CGATGACGGT GATTGTCGCG CCAATTTGCG GCCCAATCCT CGGCGGTTAT ATCAGCGATA ATTACCACTG GGGCTGGATA TTCTTCATCA ACGTGCCAAT TGGCGTGGCG GTGGTGTTGA TGACACTGCA AACCCTGCGC GGACGCGAAA CCCGCACCGA ACGGCGGCGG ATTGATGCCG TGGGGCTGGC ACTGCTGGTT ATTGGTATCG GTAGCCTGCA GATTATGCTC GACCGCGGTA AAGAGCTGGA CTGGTTTTCA TCACAGGAAA TTATCATTCT TACCGTGGTG GCGGTGGTGG CGGTGGTGGC TATCTGCTTC CTGATTGTCT GGGAGCTGAC CGACGATAAC CCGATAGTCG ATCTGTCGTT GTTTAAGTCG CGCAACTTCA CCATCGGCTG CTTGTGTATC AGCCTCGCGT ATATGCTCTA CTTCGGCGCG ATTGTTCTGC TGCCGCAGTT GTTGCAGGAG GTCTACGGTT ACACGGCGAC CTGGGCAGGT TTGGCCTCTG CGCCGGTAGG GATTATTCCG GTGATCCTGT CGCCGATTAT CGGCCGCTTC GCGCATAAAC TGGATATGCG GCGGCTGGTA ACCTTCAGCT TTATTATGTA TGTCGTCTGC TTCTACTGGC GTGCCTATAC CTTTGAACCA GGTATGGATT TTGGCGCGTC GGCCTGGCCG CAGTTTATCC AGGGGGTTGC GGTGGCCTGC TTCTTTATGC CGCTGACCAC CATTACGCTG TCTGGTTTGC CACCGGAACG ACTGGCGGCG GCATCGAGCC TCTCTAACTT TACGCGAACG CTGGCGGGGT CTATCGGCAC GTCGATAACC ACGACCATGT GGACCAACCG CGAGTCGATG CACCATGCGC AGTTGACTGA GTCGGTAAAC CCGTTCAACC CGAATGCCCA GGCGATGTAC AGTCAACTGG AAGGGCTTGG GATGACGCAA CAGCAGGCAT CAGGCTGGAT TGCCCAGCAG ATCACTAATC AGGGGCTGAT TATTTCCGCC AATGAGATCT TCTGGATGTC AGCCGGGATA TTCCTCGTCC TGCTGGGGCT GGTGTGGTTT GCTAAACCGC CCTTTGGCGC AGGTGGCGGC GGAGGTGGTG CGCACTAA
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Protein sequence | MQQQKPLEGA QLVIMTIALS LATFMQVLDS TIANVAIPTI AGNLGSSLSQ GTWVITSFGV ANAISIPLTG WLAKRVGEVK LFLWSTIAFA IASWACGVSS SLNMLIFFRV IQGIVAGPLI PLSQSLLLNN YPPAKRSIAL ALWSMTVIVA PICGPILGGY ISDNYHWGWI FFINVPIGVA VVLMTLQTLR GRETRTERRR IDAVGLALLV IGIGSLQIML DRGKELDWFS SQEIIILTVV AVVAVVAICF LIVWELTDDN PIVDLSLFKS RNFTIGCLCI SLAYMLYFGA IVLLPQLLQE VYGYTATWAG LASAPVGIIP VILSPIIGRF AHKLDMRRLV TFSFIMYVVC FYWRAYTFEP GMDFGASAWP QFIQGVAVAC FFMPLTTITL SGLPPERLAA ASSLSNFTRT LAGSIGTSIT TTMWTNRESM HHAQLTESVN PFNPNAQAMY SQLEGLGMTQ QQASGWIAQQ ITNQGLIISA NEIFWMSAGI FLVLLGLVWF AKPPFGAGGG GGGAH
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