| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3148 |
|---|
| Symbol | hypD |
|---|
| ID | 6272949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 2939746 |
|---|
| End bp | 2940867 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641727067 |
|---|
| Product | hydrogenase expression/formation protein HypD |
|---|
| Protein accession | YP_001881526 |
|---|
| Protein GI | 187731516 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTTG TTGATGAATA TCGCGCGCCG GAACAGGTGA TGCAGTTAAT TGAGCATCTG
CGCGAACGTG CTTCACATCT CTCTTACACC GCCGAACGCC CTCTGCGGAT TATGGAAGTG
TGCGGTGGTC ATACCCACGC TATTTTTAAA TTCGGCCTCG ACCAGTTACT GCCTGAAAAC
GTTGAGTTTA TCCACGGTCC GGGTTGCCCG GTGTGCGTAC TGCCGATGGG TAGAATCGAC
ACCTGCGTGG AGATTGCCAG CCATCCGGAA GTCATCTTCT GTACCTTTGG CGACGCCATG
CGCGTACCAG GGAAACAGGG ATCGCTGTTG CAGGCAAAAG CACGCGGTGC CGATGTGCGC
ATCGTTTACT CGCCGATGGA TGCGTTGAAA CTGGCGCAGG AGAATCCAAC CCGCAAAGTG
GTGTTCTTCG GCTTAGGTTT TGAAACCACC ATGCCGACCA CCGCCATCAC TCTGCAACAG
GCGAAAGCGC GTGATGTGCA GAATTTTTAC TTCTTCTGCC AGCACATTAC GCTTATCCCG
ACGCTGCGCA GTTTGCTGGA ACAGCCGGAT AACGGTATCG ACGCGTTCCT CGCGCCGGGC
CACGTTAGTA TGGTTATCGG CACTGATGCC TATAATTTTA TCGCCAGCGA TTTTCATCGT
CCGCTGGTGG TCGCTGGTTT CGAACCCCTT GATCTACTGC AAGGCGTGGT GATGCTGGTG
GAGCAGAAAA TAGCGGCCCA CAGCAAGGTA GAGAATCAGT ATCGTCGGGT GGTACCGGAT
GCCGGTAACC TGCTGGCGCA ACAGGCGATT GCCGATGTGT TCTGTGTCAA CGGCGACAGC
GAATGGCGCG GCTTAGGCGT GATTGAATCT TCTGGCGTGC ACCTGACGCC GGATTATCAA
CGATTCGATG CCGAAGCACA TTTCCGCCCG GCACCGCAGC AGGTCTGCGA TGACCCGCGC
GCGCGTTGTG GTGAGGTATT AACGGGCAAA TGTAAGCCGC ATCAATGCCC GCTGTTTGGT
AACACCTGTA ATCCTCAAAC CGCATTTGGT GCACTGATGG TCTCCTCCGA AGGAGCGTGC
GCCGCGTGGT ATCAGTATCG TCAGCAGGAG AGTGAAGCGT GA
|
|---|
| Protein sequence | MRFVDEYRAP EQVMQLIEHL RERASHLSYT AERPLRIMEV CGGHTHAIFK FGLDQLLPEN
VEFIHGPGCP VCVLPMGRID TCVEIASHPE VIFCTFGDAM RVPGKQGSLL QAKARGADVR
IVYSPMDALK LAQENPTRKV VFFGLGFETT MPTTAITLQQ AKARDVQNFY FFCQHITLIP
TLRSLLEQPD NGIDAFLAPG HVSMVIGTDA YNFIASDFHR PLVVAGFEPL DLLQGVVMLV
EQKIAAHSKV ENQYRRVVPD AGNLLAQQAI ADVFCVNGDS EWRGLGVIES SGVHLTPDYQ
RFDAEAHFRP APQQVCDDPR ARCGEVLTGK CKPHQCPLFG NTCNPQTAFG ALMVSSEGAC
AAWYQYRQQE SEA
|
|---|
| |